BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZA08FM1.SCF screened BAC_end
(947 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1744 860 0.0
>3x_Contig1744
Length = 24119
Score = 860 bits (434), Expect = 0.0
Identities = 487/502 (97%), Gaps = 2/502 (0%)
Strand = Plus / Minus
Query: 229 ctggtgatattcatgcaatcggtgctgctaataacttactagcagcagccatagatacaa 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15775 ctggtgatattcatgcaatcggtgctgctaataacttactagcagcagccatagatacaa 15716
Query: 289 ggatgttccatgaggctactcaaaagaagcacgaaacgttttacaagagattggtccctg 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15715 ggatgttccatgaggctactcaaaagaagcacgaaacgttttacaagagattggtccctg 15656
Query: 349 ttaagaagggtgtcagatcatttacaccatctatgttgacaaggttgaacaaattaggaa 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15655 ttaagaagggtgtcagatcatttacaccatctatgttgacaaggttgaacaaattaggaa 15596
Query: 409 ttaacaaaactaatcctgatgatttaaataccgaggaaattatcaaattcgcacgtctaa 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15595 ttaacaaaactaatcctgatgatttaaataccgaggaaattatcaaattcgcacgtctaa 15536
Query: 469 acattgacccatactcttttactatcaatagggtggttgacgtcaacgattgaatgttac 528
||||||||||| || || |||||||||| ||||||||||||||||||||| |||||||||
Sbjct: 15535 acattgacccagacactattactatcaagagggtggttgacgtcaacgatagaatgttac 15476
Query: 529 gtcaaatcacaattggtcaagcgccaactgaaaagggtttcactaaggcaaacaggatat 588
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 15475 gtcaaatcacaattggtcaagcgccaactgaaaagggtttcac-aaggcaaacaggattt 15417
Query: 589 gacatcactgtcgcatcagagttgatggctattttagcgttgtctaaggacttgttagat 648
||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct: 15416 gacatcactgtcgcatcagagttgatggcaattttagcgttgtctaaggacttgaaagat 15357
Query: 649 ttgatagagcgtgtcggacgtatcttatttggctctaactacgaaaaataacctataact 708
|||| ||||||||||||||||||| || |||||||||||||||||||| |||||||||||
Sbjct: 15356 ttgagagagcgtgtcggacgtatcgtaattggctctaactacgaaaaagaacctataact 15297
Query: 709 gttaacgacatttggatgtgca 730
|||||||||| |||||||||||
Sbjct: 15296 gttaacgaca-ttggatgtgca 15276
Score = 192 bits (97), Expect = 9e-49
Identities = 116/121 (95%), Gaps = 1/121 (0%)
Strand = Plus / Minus
Query: 96 tgctcatttacacaaaccttccatcgccaacgtcagacagccatcaatgggtcctacttt 155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15909 tgctcatttacacaaaccttccatcgccaacgtcagacagccatcaatgggtcctacttt 15850
Query: 156 cggtgtgaaaggtggtgcttttttgtggtgggtatgctcaggttatcccaatggatgagt 215
|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 15849 cggtgtgaaaggtggtgc-tgcaggtggtgggtatgctcaggttatcccaatggatgagt 15791
Query: 216 t 216
|
Sbjct: 15790 t 15790
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5650
Number of Sequences: 1807
Number of extensions: 5650
Number of successful extensions: 31
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)