BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZA11FM1.SCF screened BAC_end
(913 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig581 1556 0.0
>3x_Contig581
Length = 1616
Score = 1556 bits (785), Expect = 0.0
Identities = 819/828 (98%), Gaps = 2/828 (0%)
Strand = Plus / Minus
Query: 86 cagcacccatctctctaccgataccggattggccgaaaccaccgaatggaacattttgat 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 cagcacccatctctctaccgataccggattggccgaaaccaccgaatggaacattttgat 777
Query: 146 ggaagttgttgtaggtgttaatccatacggtaccggccttaactctgttggaaacgtcaa 205
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 776 ggaagttgttgtaggtgttaatccagacggtaccggccttaactctgttggaaacgtcaa 717
Query: 206 tagccttgtttttttc-ttagtgtgaataccggcagcaagaccatattcagagtcgttag 264
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 tagccttgttaacatccttagtgtgaataccggcagcaagaccatattcagagtcgttag 657
Query: 265 ccttagcgacgacttcgtcaacggtagtgaacttagagactgttacaacaggaccaaaga 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 ccttagcgacgacttcgtcaacggtagtgaacttagagactgttacaacaggaccaaaga 597
Query: 325 tttcttccttaacaatttgcatgtcttctttaacatcagcaaagatagttggcttgataa 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 tttcttccttaacaatttgcatgtcttctttaacatcagcaaagatagttggcttgataa 537
Query: 385 agtaacccttgttaccgattctttcaccaccagtgatgacacgagcaccttcagaagtac 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 agtaacccttgttaccgattctttcaccaccagtgatgacacgagcaccttcagaagtac 477
Query: 445 cgacatcaacataggataagatcttgtcaatttgcatttgagaagtttgagcaccttgga 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 cgacatcaacataggataagatcttgtcaatttgcatttgagaagtttgagcaccttgga 417
Query: 505 aaacgttttcttcgaatggattaccgacctttagagattcagcgtattgcttgaattttt 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 aaacgttttcttcgaatggattaccgacctttagagattcagcgtattgcttgaattttt 357
Query: 565 ctaagacctcttcgtaaacagtatcttgaacgtaaattcttgaacctgcgcaacagactt 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 ctaagacctcttcgtaaacagtatcttgaacgtaaattcttgaacctgcgcaacagactt 297
Query: 625 caccggagttgtagaagataccaaaagcaatgttcttaacagctttatccaagtcagcat 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 caccggagttgtagaagataccaaaagcaatgttcttaacagctttatccaagtcagcat 237
Query: 685 caccgaaaacgatatttggagacttaccaccaagttctaaagtgaccttcttgatggaat 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 caccgaaaacgatatttggagacttaccaccaagttctaaagtgaccttcttgatggaat 177
Query: 745 cggcacaagttttcataatgtgacgaccagtagcagtggaaccagtgaaagcgaccttct 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 cggcacaagttttcataatgtgacgaccagtagcagtggaaccagtgaaagcgaccttct 117
Query: 805 tgatgtcaggatgggtacaaattctttcaccgacgattttaccgaaacctgngatgatgt 864
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 116 tgatgtcaggatgggtacaaattctttcaccgacgattttaccgaaacctgggatgatgt 57
Query: 865 taacaacaccctttggtacaccagcttcttgcaccaattggcatgcat 912
|||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 56 taacaacacccttt-gtacaccagcttcttgcaccaattagcatgcat 10
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6129
Number of Sequences: 1807
Number of extensions: 6129
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 913
length of database: 10,358,551
effective HSP length: 16
effective length of query: 897
effective length of database: 10,329,639
effective search space: 9265686183
effective search space used: 9265686183
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)