BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZA11RM1.SCF screened BAC_end
(916 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1224 1639 0.0
>3x_Contig1224
Length = 5948
Score = 1639 bits (827), Expect = 0.0
Identities = 864/874 (98%), Gaps = 2/874 (0%)
Strand = Plus / Plus
Query: 44 gctttgaagtccaaatcacgaactataagccgactgaacataaatttgcatctgaagagt 103
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 3890 gctttgaagtccaaatcacgaaccataagccgactgaacataaatttgcatctgaagagt 3949
Query: 104 caaattgactccagttttcagtgaaagggttgatactatcacaagaacctacattactgt 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3950 caaattgactccagttttcagtgaaagggttgatactatcacaagaacctacattactgt 4009
Query: 164 tcaaattccagtcagtactgttgcatccgcctattcggctaccagtaccgattttttgac 223
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 4010 tcaaattccagtcagtactgttgcatccgcctattcggctaccagtaccgaaatcaggac 4069
Query: 224 tattaatacctcttgttttaggtgaatatgctcgtgtaatgtaacagaatatggtgtcga 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4070 tattaatacctcttgttttaggtgaatatgctcgtgtaatgtaacagaatatggtgtcga 4129
Query: 284 ttttggataatggtacaatagatagaaaaattgttgttacaatggacactgtcaatgaaa 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4130 ttttggataatggtacaatagatagaaaaattgttgttacaatggacactgtcaatgaaa 4189
Query: 344 taaatgaaattatagtcaaaatattctcattaataagtcttttcctcgatatatgaaaaa 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4190 taaatgaaattatagtcaaaatattctcattaataagtcttttcctcgatatatgaaaaa 4249
Query: 404 gcgacaaaatacctgatggcggtattatgtttaaaagaagcatgaaaattagtataaata 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4250 gcgacaaaatacctgatggcggtattatgtttaaaagaagcatgaaaattagtataaata 4309
Query: 464 atcttgattttgtgggttttcggagatttgaatcgcgtgggacaaaaaacatttcaccaa 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4310 atcttgattttgtgggttttcggagatttgaatcgcgtgggacaaaaaacatttcaccaa 4369
Query: 524 taatcgcagatatggtaatcaagcacgagaatgtacctgccaacgacataactgagaata 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4370 taatcgcagatatggtaatcaagcacgagaatgtacctgccaacgacataactgagaata 4429
Query: 584 aaacgaataactcagggtcattgtccaaagtttgtatataatgttttgtgaacaacggtt 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4430 aaacgaataactcagggtcattgtccaaagtttgtatataatgttttgtgaacaacggtt 4489
Query: 644 ttaggtttataacagaaaaataccaaaaagtggcaacgtgaatggtccaaattctatgga 703
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4490 ttaggtttatcacagaaaaataccaaaaagtggcaacgtgaatggtccaaattctatgga 4549
Query: 704 aattcgtgatcaaatggtaccaagtacgtgattcaatataggttttccgtaaggattttg 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4550 aattcgtgatcaaatggtaccaagtacgtgattcaatataggttttccgtaaggattttg 4609
Query: 764 accattcaatctgtgtgaacttagaatatntcatatcccgcggtagatcggcatagttgg 823
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 4610 accattcaatctgtgtgaacttagaatatttcatatcccgcggtagatcggcatagttgg 4669
Query: 824 taccatctttcaa-ttaaactggttaatggtttttaatgaccagaaacattgattaatat 882
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4670 taccatctttcaatttaaactggttaatggtttttaatgaccagaaacattgattaatat 4729
Query: 883 cgtcgtatcctataatatgggnaatggtcgttac 916
||||||||||||||||||||| ||||||||||||
Sbjct: 4730 cgtcgtatcctataatatggg-aatggtcgttac 4762
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6982
Number of Sequences: 1807
Number of extensions: 6982
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)