BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZA12FM1.SCF screened BAC_end
(953 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig89 1045 0.0
3x_Contig955 392 e-109
>3x_Contig89
Length = 784
Score = 1045 bits (527), Expect = 0.0
Identities = 581/599 (96%)
Strand = Plus / Plus
Query: 86 ccaattagagaaatgttacaagttgtacgcaagaagcctacaggatccgcatgatgctgg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 ccaattagagaaatgttacaagttgtacgcaagaagcctacaggatccgcatgatgctgg 129
Query: 146 taaatcctggcaaataactgataaatctggtatgtcacctttactgctattgcaatcgat 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 taaatcctggcaaataactgataaatctggtatgtcacctttactgctattgcaatcgat 189
Query: 206 ggttatgaataaggcatggtataagaggaaactactcaataaggatgtcaagagtggaaa 265
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ggttatgaataaggcagggtataagaggaaactactcaataaggatgtcaagagtggaaa 249
Query: 266 atcctactccagatgtttcaattttggttccaatgtcaacatgcagttaggtaccggtga 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 atcctactccagatgtttcaattttggttccaatgtcaacatgcagttaggtaccggtga 309
Query: 326 taataatgatagattaacctcatggtatgaaattgattcttggaagatgtgtgataatga 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 taataatgatagattaacctcatggtatgaaattgattcttggaagatgtgtgataatga 369
Query: 386 tctaagatttaaatcatgctgtatgaccaaatactactctctgttattgatggtagacaa 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tctaagatttaaatcatgctgtatgaccaaatactactctctgttattgatggtagacaa 429
Query: 446 ggatggaacaaattcagcatacatcactggccgttctacgaaattaaatttgtttggaaa 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ggatggaacaaattcagcatacatcactggccgttctacgaaattaaatttgtttggaaa 489
Query: 506 aagagatctcttcaggtatgtaaaattctctgacaagaaattacaagatatcaagtgctc 565
|||||||||||||| ||||||||||| |||| |||| ||||||||| ||||||| | |||
Sbjct: 490 aagagatctcttcatgtatgtaaaatgctcttacaataaattacaatatatcaatttctc 549
Query: 566 caatcatcatataattgccaaaacaaccaatggaaatatacttttatgggggtccaataa 625
|||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 550 caatcatcatattatttccaaaacaaccaatggaaatatacttttatgggggtaaaataa 609
Query: 626 atatggtcaattgggtttaaaccctaaaaccaccgagttttcagatcaacccaattcaa 684
||||||| |||||||||||||||| ||||||||| | ||||| |||||||||||||||
Sbjct: 610 atatggtaaattgggtttaaacccgaaaaccacctatgtttcatatcaacccaattcaa 668
>3x_Contig955
Length = 4159
Score = 392 bits (198), Expect = e-109
Identities = 226/234 (96%), Gaps = 1/234 (0%)
Strand = Plus / Minus
Query: 720 tgttcgaatatacacacatgcgtgctatcaaaatctggttcaatcaaatcttggggatta 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4144 tgttcgaatatacacacatgcgtgctatcaaaatctggttcaatcaaatcttggggatta 4085
Query: 780 gacgttggtcaatttggatctactagtaaattcaaaaaagagaccccttatctcgatcaa 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4084 gacgttggtcaatttggatctactagtaaattcaaaaaagagaccccttatctcgatcaa 4025
Query: 840 aaaagacaaattttcgccacaaccagttacctcgtttttaccagctgatataaacgagcc 899
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4024 aaaggacaaa-tttcgccacaaccagttacctcgtttttaccagctgatataaacgagcc 3966
Query: 900 gactgttcttgtcttgtcagaacccgttacttttattttatgcggtgggaatcg 953
|||||||||||||| |||| | |||||||||||||||||||||||| |||||
Sbjct: 3965 gactgttcttgtctgtacagacctcgttacttttattttatgcggtggaaatcg 3912
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7322
Number of Sequences: 1807
Number of extensions: 7322
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 2
length of query: 953
length of database: 10,358,551
effective HSP length: 16
effective length of query: 937
effective length of database: 10,329,639
effective search space: 9678871743
effective search space used: 9678871743
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)