BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZB01FM1.SCF screened BAC_end
(907 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1620 1606 0.0
>3x_Contig1620
Length = 12263
Score = 1606 bits (810), Expect = 0.0
Identities = 820/822 (99%), Gaps = 1/822 (0%)
Strand = Plus / Plus
Query: 87 aagagaaaataaaatatacgtgtcacgtgaaaacactaagaactatggaagtatatctat 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6944 aagagaaaataaaatatacgtgtcacgtgaaaacactaagaactatggaagtatatctat 7003
Query: 147 taaagggaagaacgaaacacgcaatgctataaatggtgtcggacagaagatcttaatcct 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7004 taaagggaagaacgaaacacgcaatgctataaatggtgtcggacagaagatcttaatcct 7063
Query: 207 gtagttggatacctcttgctgtgaggaaatcaaagattggcctttgtggttttttgccct 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7064 gtagttggatacctcttgctgtgaggaaatcaaagattggcctttgtggttttttgccct 7123
Query: 267 tttcgtcggatggagtaggatctgatggagccttttgttccaaatcttcggtaacaagtt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7124 tttcgtcggatggagtaggatctgatggagccttttgttccaaatcttcggtaacaagtt 7183
Query: 327 ccactgcttgagagggttgctgtagttcttgccccttcagctgctgttgttcttggctaa 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7184 ccactgcttgagagggttgctgtagttcttgccccttcagctgctgttgttcttggctaa 7243
Query: 387 tattatatgaagggttgaaggtgtcgatgtacgaaaaaaaggcgttgaagacgttttcat 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7244 tattatatgaagggttgaaggtgtcgatgtacgaaaaaaaggcgttgaagacgttttcat 7303
Query: 447 tgacttcttcaaggtaaattttatcgtagatatgtttcatcttgaacgtatccatttcgc 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7304 tgacttcttcaaggtaaattttatcgtagatatgtttcatcttgaacgtatccatttcgc 7363
Query: 507 tttgatatttactgaagtcaatcggatcatatccgaattcttgtaatctagtgttgtaac 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7364 tttgatatttactgaagtcaatcggatcatatccgaattcttgtaatctagtgttgtaac 7423
Query: 567 catcataaaccggggcttccaataataaacctaaagcaggggcttttggaatattgattt 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7424 catcataaaccggggcttccaataataaacctaaagcaggggcttttggaatattgattt 7483
Query: 627 tttcttgaccgtatgcctgcctaattctttccaatggactgaaacatcttgtgatcaaag 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7484 tttcttgaccgtatgcctgcctaattctttccaatggactgaaacatcttgtgatcaaag 7543
Query: 687 ttgccatagatatcatcttacgaatttgatgtaacataaacgattgaccgtggattttga 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7544 ttgccatagatatcatcttacgaatttgatgtaacataaacgattgaccgtggattttga 7603
Query: 747 tcgatacccattccgtcttagcttcaccaataacaaacggttctgagactgtgatttgct 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7604 tcgatacccattccgtcttagcttcaccaataacaaacggttctgagactgtgatttgct 7663
Query: 807 tcatgaatctcttggcgctcggatcgttgaaatctttccccaa-gtgaaaatatggaagt 865
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 7664 tcatgaatctcttggcgctcggatcgttgaaatctttccccaaggtgaaattatggaagt 7723
Query: 866 taaaagtaccctcgtattgttttaatgcacttctgaatctat 907
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7724 taaaagtaccctcgtattgttttaatgcacttctgaatctat 7765
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6615
Number of Sequences: 1807
Number of extensions: 6615
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 907
length of database: 10,358,551
effective HSP length: 16
effective length of query: 891
effective length of database: 10,329,639
effective search space: 9203708349
effective search space used: 9203708349
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)