BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZB01RM1.SCF screened BAC_end
(905 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1777 1618 0.0
>3x_Contig1777
Length = 26319
Score = 1618 bits (816), Expect = 0.0
Identities = 842/852 (98%)
Strand = Plus / Plus
Query: 48 cttaaaggtactggagagatctgcaggtgctgcacggttcccaccgaaacacttttcaaa 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25061 cttaaaggtactggagagatctgcaggtgctgcacggttcccaccgaaacacttttcaaa 25120
Query: 108 tattccggttgctttgataccttttttaattctaccctttctcccagtagtaagttacca 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25121 tattccggttgctttgataccttttttaattctaccctttctcccagtagtaagttacca 25180
Query: 168 acatttctcaaagccttgcctactttgatgacattggtttgtgaggatncgttcnngtgg 227
||| | | ||||||||||||||||||||||||||||||||||||||| ||| | | ||
Sbjct: 25181 acactacgcaaagccttgcctactttgatgacattggtttgtgaggaatcgtccttgagg 25240
Query: 228 gccctactaatacctacgatacctttttctccctcccttgaaatcatacaaaagttatca 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25241 gccctactaatacctacgatacctttttctccctcccttgaaatcatacaaaagttatca 25300
Query: 288 ttcttcaattcaagatatttcattacctctgcattaatctctatgaccccttgaccatta 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25301 ttcttcaattcaagatatttcattacctctgcattaatctctatgaccccttgaccatta 25360
Query: 348 tcggcattgttgtcaattggacgtacaatgaattgttgtggtagtttgaacttggtcttt 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25361 tcggcattgttgtcaattggacgtacaatgaattgttgtggtagtttgaacttggtcttt 25420
Query: 408 gtttcctcagatgcaccagaagatacaccagttttcttcttactgttagaagagttactt 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25421 gtttcctcagatgcaccagaagatacaccagttttcttcttactgttagaagagttactt 25480
Query: 468 ttagtagccatgcttcctctttgaatggatcttaaagggcccgtacctatccttctattg 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25481 ttagtagccatgcttcctctttgaatggatcttaaagggcccgtacctatccttctattg 25540
Query: 528 tttatttgcttcaggtaatgtctctttaaatgaataagatgagaactgcgatgagatgag 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25541 tttatttgcttcaggtaatgtctctttaaatgaataagatgagaactgcgatgagatgag 25600
Query: 588 atgagcttcgaactttttcctttcaatattgaaaaagttcgaaatgtagaatttgaatac 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25601 atgagcttcgaactttttcctttcaatattgaaaaagttcgaaatgtagaatttgaatac 25660
Query: 648 gcagatgcattcacaagttataagggaagtccaattcaaaaacagcagttgcaagacact 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25661 gcagatgcattcacaagttataagggaagtccaattcaaaaacagcagttgcaagacact 25720
Query: 708 gtgagcgatgattaggcggccagcagtagctactttatcatgtatgagatcgttgtataa 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25721 gtgagcgatgattaggcggccagcagtagctactttatcatgtatgagatcgttgtataa 25780
Query: 768 atcagttacaaacctgactggacttncacaaagaaatcgggttcaagattataaaagaat 827
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 25781 atcagttacaaacctgactggacttccacaaagaaatcgggttcaagattataaaagaat 25840
Query: 828 aaagcgtatattgcaggctttacacacgaataaatacgatgatatgaaggtaccgtctat 887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25841 aaagcgtatattgcaggctttacacacgaataaatacgatgatatgaaggtaccgtctat 25900
Query: 888 tgaccaattaat 899
||||||||||||
Sbjct: 25901 tgaccaattaat 25912
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7955
Number of Sequences: 1807
Number of extensions: 7955
Number of successful extensions: 322
Number of sequences better than 1.0e-20: 1
length of query: 905
length of database: 10,358,551
effective HSP length: 16
effective length of query: 889
effective length of database: 10,329,639
effective search space: 9183049071
effective search space used: 9183049071
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)