BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZB02FM1.SCF screened BAC_end
(946 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig913 1618 0.0
>3x_Contig913
Length = 2857
Score = 1618 bits (816), Expect = 0.0
Identities = 850/860 (98%), Gaps = 1/860 (0%)
Strand = Plus / Minus
Query: 87 tagagggaacttttcttttcatcggtttgttctttgggctaaataaccaaacctaatcca 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2026 tagagggaacttttcttttcatcggtttgttctttgggctaaataaccaaacctaatcca 1967
Query: 147 gtggcataataagtcccttccaagtaatacacttattgcatcagaaggcgaattgctcta 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1966 gtggcataataagtcccttccaagtaatacacttattgcatcagaaggcgaattgctcta 1907
Query: 207 atattttttttgaaacctgaaatccttagtcacaggtattagaaactatgagtgattcgg 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1906 atattttttttgaaacctgaaatccttagtcacaggtattagaaactatgagtgattcgg 1847
Query: 267 gcagttttcctggttataaccagtttttagagatggtgaagacaactttggcgaaagtga 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1846 gcagttttcctggttataaccagtttttagagatggtgaagacaactttggcgaaagtga 1787
Query: 327 taagaagttcggacaaagtaccgcaacatgtagcgttcattatggatggtaaccgtaggt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1786 taagaagttcggacaaagtaccgcaacatgtagcgttcattatggatggtaaccgtaggt 1727
Query: 387 ttgctaagaagaataacatggaggtcaatgagggacataatgctggatttgaaagtatgt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1726 ttgctaagaagaataacatggaggtcaatgagggacataatgctggatttgaaagtatgt 1667
Query: 447 gtcgtatccttgaattgtgttatgaatcagggatgaaagttgctacagtatttgcgttct 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1666 gtcgtatccttgaattgtgttatgaatcagggatgaaagttgctacagtatttgcgttct 1607
Query: 507 cgatagagaattttaagaggagtacgtttgaagtgaactggctgatggaattggcaaagg 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1606 cgatagagaattttaagaggagtacgtttgaagtgaactggctgatggaattggcaaagg 1547
Query: 567 ataagattaagcagatatctcagcatggagaattagcggagcaatatggtattaaagttc 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1546 ataagattaagcagatatctcagcatggagaattagcggagcaatatggtattaaagttc 1487
Query: 627 aaatcattggagataggtcgttattaccggctgacgttttgaaagaagtggagttagcgg 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1486 aaatcattggagataggtcgttattaccggctgacgttttgaaagaagtggagttagcgg 1427
Query: 687 aagaaattactatgaataattcaagggcagtattgaacatatgcttcccatatacaggga 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1426 aagaaattactatgaataattcaagggcagtattgaacatatgcttcccatatacaggga 1367
Query: 747 gagaagagatcgtgcattcaatacagggaataatgaaagaaacggccatgggggaaattg 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1366 gagaagagatcgtgcattcaatacagggaataatgaaagaaacggccatgggggaaattg 1307
Query: 807 attatagagacattgacgaacaaacgattgaggattcattatatacacagggtcagccac 866
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 1306 attatagagacattgacgaacaaacgatagaggatcatttatatacacagggtcagccac 1247
Query: 867 ctgtggagcttttgat-agaacaagtggagtcaccaggctcagcggatttttgctatggc 925
|||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1246 ctgtggagcttttgataagaacaagtggagtcaccaggctcagcgattttttgctatggc 1187
Query: 926 aacttaataacagaagatgt 945
|||| | ||||||| |||||
Sbjct: 1186 aactaagtaacagaggatgt 1167
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6409
Number of Sequences: 1807
Number of extensions: 6409
Number of successful extensions: 30
Number of sequences better than 1.0e-20: 1
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)