BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZB03FM1.SCF screened BAC_end
(953 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1265 1576 0.0
>3x_Contig1265
Length = 8324
Score = 1576 bits (795), Expect = 0.0
Identities = 842/857 (98%), Gaps = 1/857 (0%)
Strand = Plus / Plus
Query: 85 gcatgtactttcatacattatgtcatcttcgaaaaagaatgaagtggccccacctaaaat 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30 gcatgtactttcatacattatgtcatcttcgaaaaagaatgaagtggccccacctaaaat 89
Query: 145 ttgttcggtacgtgtctgccagacattagacccatttgttgcattgtacatatacgcgca 204
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 90 ttgttcggtacgtgtctgccagacatcagacccatttgttgcattgtacatatacgcgca 149
Query: 205 tccgccaagaacaatactatggttatagctccattcgtatttcacaatggaagtacagtt 264
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 tccgccaagaacaacaccatggttatagctccattcgtatttcacaatggaagtacagtt 209
Query: 265 atcgtcgatagtcgcaccatcgaaaacattggcctcttccttcattactacgaaatcaat 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 atcgtcgatagtcgcaccatcgaaaacattggcctcttccttcattactacgaaatcaat 269
Query: 325 atcgacaagccaatcgaagaccttttctgctacctccaaataagtagtgttacccgtata 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 atcgacaagccaatcgaagaccttttctgctacctccaaataagtagtgttacccgtata 329
Query: 385 tcttccgagtcgtgctgccaattggaagagacaaccattggaaattgtgttcttataatt 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tcttccgagtcgtgctgccaattggaagagacaaccattggaaattgtgttcttataatt 389
Query: 445 gtatcccgagttccaggtaaagatttgccatcttaagccaccgttacaatggtctgaatc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 gtatcccgagttccaggtaaagatttgccatcttaagccaccgttacaatggtctgaatc 449
Query: 505 ccaacgtgagtacatttgattgaaaacagcttgtaccatggccaaccagccaggtgtgcc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 ccaacgtgagtacatttgattgaaaacagcttgtaccatggccaaccagccaggtgtgcc 509
Query: 565 gtcttccttcggatttgtgaaatttctttccacggcagtcattactgtcaaagcccaaac 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 gtcttccttcggatttgtgaaatttctttccacggcagtcattactgtcaaagcccaaac 569
Query: 625 accttgatcatcattaccttccaccatagtttgattacttggcatgtaatcataatcgga 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 accttgatcatcattaccttccaccatagtttgattacttggcatgtaatcataatcgga 629
Query: 685 cccagtttgtgccatcaaagcatcgtaaagcatatcttcatacgatgtattntgacatag 744
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 630 cccagtttgtgccatcaaagcatcgtaaagcatatcttcatacgatgtattttgacatag 689
Query: 745 ataccaattttcaatcatacctncgaaagacagttcgggctttccaccaatagtatggcg 804
|||||||||||||||||||||| || |||||| || ||||| |||||||||||||||||
Sbjct: 690 ataccaattttcaatcatacctccg-aagacaagtccggcttcccaccaatagtatggcg 748
Query: 805 atacaaacataccgacagtcccaccatatacgtcaccttcatagtaatcactaatacctt 864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 atacaaacataccgacagtcccaccatatacgtcaccttcatagtaatcactaatacctt 808
Query: 865 gtttgatcaaagcagttgctgtacatatcgacgacttggaactagttgtcaaatcaatcg 924
||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 809 gttgaatcaaagcagttgctgtacatatcgacgacttggaactagtgtccaaatcaatcg 868
Query: 925 caaggacggatactacc 941
|||||||||||||||||
Sbjct: 869 caaggacggatactacc 885
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5335
Number of Sequences: 1807
Number of extensions: 5335
Number of successful extensions: 31
Number of sequences better than 1.0e-20: 1
length of query: 953
length of database: 10,358,551
effective HSP length: 16
effective length of query: 937
effective length of database: 10,329,639
effective search space: 9678871743
effective search space used: 9678871743
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)