BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZB03RM1.SCF screened BAC_end
(947 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1776 1550 0.0
>3x_Contig1776
Length = 26138
Score = 1550 bits (782), Expect = 0.0
Identities = 885/911 (97%), Gaps = 7/911 (0%)
Strand = Plus / Plus
Query: 43 ctttgaagcgtaaagaggctaatatgcgtaagtcgaccgtcgaatggcgtgaacgtaaac 102
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 13781 ctttgaagcgtaaagaggctaagaagcgtaagtcgaccgtcgaatggcgtgaacgtaaac 13840
Query: 103 aagtggtagaaaacactgttgccgaaagacagaagagaagagaggaaaatctacagatta 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13841 aagtggtagaaaacactgttgccgaaagacagaagagaagagaggaaaatctacagatta 13900
Query: 163 gaaaggacaataaaggtaagaagaagagcaaacaacagaagatgaagagaaaatt-tttg 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 13901 gaaaggacaataaaggtaagaagaagagcaaacaacagaagatgaagagaaaattcaagg 13960
Query: 222 gaactgcccatttgaagaaaagagcaggatttgaaggacgtatgaaaagtgtcaagaaga 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13961 gaactgcccatttgaagaaaagagcaggatttgaaggacgtatgaaaagtgtcaagaaga 14020
Query: 282 aatgagccttaatcaactaatattctccatccaacaaataaaagcataatatcatatttc 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14021 aatgagccttaatcaactaatattctccatccaacaaataaaagcataatatcatatttc 14080
Query: 342 atcctttcaagttatagattaac-cttttactttta-cttttgcatctctatttttatat 399
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct: 14081 atcctttcaagttatagattaacgcttttacttttaccttttgcatctctatttttatat 14140
Query: 400 actgacacccaatgatatataaaaataaatataatcaaacccagaatgtaataatgcata 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14141 actgacacccaatgatatataaaaataaatataatcaaacccagaatgtaataatgcata 14200
Query: 460 aaatctctattaccatgtagtctttaataatggatttcagaagccaatgtgcggttattt 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14201 aaatctctattaccatgtagtctttaataatggatttcagaagccaatgtgcggttattt 14260
Query: 520 cttttcattcattttaaactgcgttcgaaaaatcatgaaaatggttcagacgcaatagta 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14261 cttttcattcattttaaactgcgttcgaaaaatcatgaaaatggttcagacgcaatagta 14320
Query: 580 tagatgaaataaggtatctcgatgagatgaggttgaagaggttcactccagcgaaacaag 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14321 tagatgaaataaggtatctcgatgagatgaggttgaagaggttcactccagcgaaacaag 14380
Query: 640 gcaacgttgcagaagagaaagattctatattgcataatgctgaatgtgataacctgtcga 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14381 gcaacgttgcagaagagaaagattctatattgcataatgctgaatgtgataacctgtcga 14440
Query: 700 agtcgattaagtttactcgttacaccaagacaacttcgatatatacgaaccanaagttta 759
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 14441 agtcgattaagtttactcgttacaccaagacaacttcgatatatacgaaccaaaagttta 14500
Query: 760 tcaaatactatctncactataaagaaaaatgctgattatgcaatgcatatacagggagaa 819
||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 14501 tcaaatactatctccactataaagaaaaatgctgataatgcaatgcatataca-ggagaa 14559
Query: 820 gc-agacattgctggttttgaaaaacatgacttcactggagttgatataaactctggtgt 878
|| ||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||
Sbjct: 14560 gcaagacattgctgttttgaaaaaacatgacttcactgaagttgatataaactctggtgt 14619
Query: 879 gaattc-tggntcttatcatatttagcgtggacaaattcgggcttcaggaattc-aagaa 936
|||||| ||| ||||||||||||||||| ||||||| ||||||||| ||| || |||||
Sbjct: 14620 gaattcttggttcttatcatatttagcggtgacaaatccgggcttcaagaaatcaaagaa 14679
Query: 937 gaatctccgaa 947
|||||| ||||
Sbjct: 14680 gaatcttcgaa 14690
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9868
Number of Sequences: 1807
Number of extensions: 9868
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)