BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZB04FM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1635 1580 0.0
>3x_Contig1635
Length = 12349
Score = 1580 bits (797), Expect = 0.0
Identities = 818/824 (99%), Gaps = 1/824 (0%)
Strand = Plus / Plus
Query: 89 ggctcctgttttcgaatctgaagctcgtttctccaagaagaaggatgtaccaactttggg 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10385 ggctcctgttttcgaatctgaagctcgtttctccaagaagaaggatgtaccaactttggg 10444
Query: 149 tgatatgaacacttccaaggaagacgttgaaaagttctactctttctggcacagattcga 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10445 tgatatgaacacttccaaggaagacgttgaaaagttctactctttctggcacagattcga 10504
Query: 209 ctcttggagaacatttgagttcttggatgaagaagttcctgatgattcttccaacagaga 268
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10505 ctcttggagaacattcgagttcttggatgaagaagttcctgatgattcttccaacagaga 10564
Query: 269 tcacaagcgttacatcgaaagaaagaacaaggcggccagagataagaagaagactgctga 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10565 tcacaagcgttacatcgaaagaaagaacaaggcggccagagataagaagaagactgctga 10624
Query: 329 caacgctcgtttggtgaaattagtcgaaagagccatgaacgaagatccacgtatcaagca 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10625 caacgctcgtttggtgaaattagtcgaaagagccatgaacgaagatccacgtatcaagca 10684
Query: 389 attcaaggaagaagaaaagaaggaaaaggaaagaaagaaatgggaaagggaagccggtgc 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10685 attcaaggaagaagaaaagaaggaaaaggaaagaaagaaatgggaaagggaagccggtgc 10744
Query: 449 tagagccgaagctgaagccaaggccaaggctgaagctgaagctaaggctaaggctgaagc 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10745 tagagccgaagctgaagccaaggccaaggctgaagctgaagctaaggctaaggctgaagc 10804
Query: 509 ggacgctgctcaagccgcatctgccaaggttgacaaaaagaaggccaaggaagctgctaa 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10805 ggacgctgctcaagccgcatctgccaaggttgacaaaaagaaggccaaggaagctgctaa 10864
Query: 569 ggctgctaagaagaagaataagagaagtatccgtaacgctccaaaggatgctgattactt 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10865 ggctgctaagaagaagaataagagaagtatccgtaacgctccaaaggatgctgattactt 10924
Query: 629 tggtgatgccgacaaatccactaccatcgaggaacaaactggtttgattgtcgactcttt 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10925 tggtgatgccgacaaatccactaccatcgaggaacaaactggtttgattgtcgactcttt 10984
Query: 689 ggacgacgaacaattggttgacgttgctgaaaagatcaagagtgatactgctgctgctaa 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10985 ggacgacgaacaattggttgacgttgctgaaaagatcaagagtgatactgctgctgctaa 11044
Query: 749 aaacatattgtctgatgcagcaaaggctttgactgacgctgggaaattaccggctgctat 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11045 aaacatattgtctgatgcagcaaaggctttgactgacgctgggaaattaccggctgctat 11104
Query: 809 tgtctcttactacttantaatttaaagatgagatcagttc-aaaccagcccagagggaat 867
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 11105 tgtctcttactacttataaatttaaagatgagatcagttcaaaaccagcccagaggaaat 11164
Query: 868 atatagcatattacatagtctactgacattggctctgctattta 911
||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 11165 atatagcatataacatagtctactgacattggctctgctattta 11208
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8525
Number of Sequences: 1807
Number of extensions: 8525
Number of successful extensions: 117
Number of sequences better than 1.0e-20: 1
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)