BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZB04RM1.SCF screened BAC_end
(905 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1061 1637 0.0
>3x_Contig1061
Length = 4663
Score = 1637 bits (826), Expect = 0.0
Identities = 836/840 (99%)
Strand = Plus / Minus
Query: 48 ctttgaacatgagaattactttttactgcgttcagaacaagaactttgaaaatactcgat 107
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1091 ctttcaacatgagaattactttttactgcgttcagaacaagaactttgaaaatactcgat 1032
Query: 108 gagctcatgaaaagaggaaaaactcaatcattgtttcagactttgcagcaacgtctagtg 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1031 gagctcatgaaaagaggaaaaactcaatcattgtttcagactttgcagcaacgtctagtg 972
Query: 168 aacttagaacctcttgactgtacagcaatgcccttggttttactaactggttttccgagt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 971 aacttagaacctcttgactgtacagcaatgcccttggttttactaactggttttccgagt 912
Query: 228 agcggtaaaacaactgtggccaagaaactcgtcacgttactacaggaaactatcgattcc 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 911 agcggtaaaacaactgtggccaagaaactcgtcacgttactacaggaaactatcgattcc 852
Query: 288 aacgataaactgtcaaactattctgttgtataccattcagatgaaaccttaaacatatct 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 aacgataaactgtcaaactattctgttgtataccattcagatgaaaccttaaacatatct 792
Query: 348 cacgatgattatattgggtcaaatgaagaaagaagggcaagatctaagattatgtctgtg 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 cacgatgattatattgggtcaaatgaagaaagaagggcaagatctaagattatgtctgtg 732
Query: 408 gtgaagagagatctttctcgtcagaaagtcgtcattgttgattcgttgaattacataaaa 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 gtgaagagagatctttctcgtcagaaagtcgtcattgttgattcgttgaattacataaaa 672
Query: 468 ggattccggtatcaattgcactgtgaagtgaaaaacgtgatgacaacgtattgtttgatc 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 ggattccggtatcaattgcactgtgaagtgaaaaacgtgatgacaacgtattgtttgatc 612
Query: 528 cacacggtatgcccaatgagcaacttggttgaatggaatgagaaagagactgatttgcat 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 cacacggtatgcccaatgagcaacttggttgaatggaatgagaaagagactgatttgcat 552
Query: 588 aaaccttgggaaagcaattttttgaatgctcttattcaaaggtatgaagaaccaaaccct 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 aaaccttgggaaagcaattttttgaatgctcttattcaaaggtatgaagaaccaaaccct 492
Query: 648 caaacaaggtgggattctccattattcactatattgacgtctcaagatgacatcagtacc 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 caaacaaggtgggattctccattattcactatattgacgtctcaagatgacatcagtacc 432
Query: 708 ctatacacagatattagtaaggcaatattcccaaccgtgttcaaaccggcaacgaatgat 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ctatacacagatattagtaaggcaatattcccaaccgtgttcaaaccggcaacgaatgat 372
Query: 768 agagatactgagaagatcctgcaacaattaaagccaaacaatgccacgatattganagct 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 371 agagatactgagaagatcctgcaacaattaaagccaaacaatgccacgatattgaaggct 312
Query: 828 gcctctcacactaactctttgcaaatacttgactccgaggccagtagtgtcatanagatt 887
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 311 gcctctcacactaactctttgcaaatacttgactccgaggccagtagtgtcataaagatt 252
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6257
Number of Sequences: 1807
Number of extensions: 6257
Number of successful extensions: 29
Number of sequences better than 1.0e-20: 1
length of query: 905
length of database: 10,358,551
effective HSP length: 16
effective length of query: 889
effective length of database: 10,329,639
effective search space: 9183049071
effective search space used: 9183049071
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)