BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZB05FM1.SCF screened BAC_end
(941 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1176 1600 0.0
>3x_Contig1176
Length = 5769
Score = 1600 bits (807), Expect = 0.0
Identities = 848/858 (98%), Gaps = 3/858 (0%)
Strand = Plus / Minus
Query: 84 gcttcaacaatagcattggtaaattctacaccgtagtcttcgaactcttctaaattacca 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2559 gcttcaacaatagcattggtaaattctacaccgtagtcttcgaactcttctaaattacca 2500
Query: 144 ttatcagtactactttctttctcctgaatattgaattgataatcttttttcaaagacgcc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2499 ttatcagtactactttctttctcctgaatattgaattgataatcttttttcaaagacgcc 2440
Query: 204 tcatcagattgcatgatttatgagctgtatcttgaacagtattgtctttcctgtttttac 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2439 tcatcagattgcatgatttatgagctgtatcttgaacagtattgtctttcctgtttttac 2380
Query: 264 gctcgttgctggtcttagtactatcacgaaacttatttaaatccaaatgcttattcaata 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2379 gctcgttgctggtcttagtactatcacgaaacttatttaaatccaaatgcttattcaata 2320
Query: 324 accatggtctgagacaaaataggaacccttggacttgtatttatatctgttgaatcgatc 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2319 accatggtctgagacaaaataggaacccttggacttgtatttatatctgttgaatcgatc 2260
Query: 384 aagctgggaaagacgctcgtgatgtatctaacctgctgataacctccagttgaactcaga 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2259 aagctgggaaagacgctcgtgatgtatctaacctgctgataacctccagttgaactcaga 2200
Query: 444 gtgatcctccaagatgaaaaaaaaaaactcttatcttgcgggctctaaaattaacactaa 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2199 gtgatcctccaagatgaaaaaaaaaaactcttatcttgcgggctctaaaattaacactaa 2140
Query: 504 actctagtactctggaagtttgtctactccacaaaactcaccccttctgttgaatttact 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2139 actctagtactctggaagtttgtctactccacaaaactcaccccttctgttgaatttact 2080
Query: 564 aagtgtaaacctcagttgcaaaatggagtagtttgattgagttgcttgcccgcttggttt 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2079 aagtgtaaacctcagttgcaaaatggagtagtttgattgagttgcttgcccgcttggttt 2020
Query: 624 ctttctttctttcgctactcttagcactccaaaatcagccatacacagactaacaatcag 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2019 ctttctttctttcgctactcttagcactccaaaatcagccatacacagactaacaatcag 1960
Query: 684 tacattctccgacaatcctgtcaaaagtgacagatgcgggatcaaatagcactcctggta 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1959 tacattctccgacaatcctgtcaaaagtgacagatgcgggatcaaatagcactcctggta 1900
Query: 744 tatcggatattgataccactcctcgtgatacgggtttatgaaactttagatgagtcgatt 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1899 tatcggatattgataccactcctcgtgatacgggtttatgaaactttagatgagtcgatt 1840
Query: 804 tgacaggtttctcctagttgccagatttcctatactgtaaactttaaaatgaaaattccg 863
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1839 tgacaggtttctcctagttgccagaattcctatactgtaaactttaaaatgaaaattccg 1780
Query: 864 t-atgcggacgctttgtgtg-aaaatcagatttcgagatta-gatcattnggcggcatta 920
| |||||||||| ||||||| ||||||||| |||||||||| |||||| ||||||||||
Sbjct: 1779 taatgcggacgcattgtgtgaaaaatcagaattcgagattaggatcataaggcggcatta 1720
Query: 921 gtctttcttgattgggaa 938
|||||||| |||| ||||
Sbjct: 1719 gtctttctcgatttggaa 1702
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,928
Number of Sequences: 1807
Number of extensions: 11928
Number of successful extensions: 82
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)