BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZB05RM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig837 1455 0.0
>3x_Contig837
Length = 3290
Score = 1455 bits (734), Expect = 0.0
Identities = 835/857 (97%), Gaps = 9/857 (1%)
Strand = Plus / Minus
Query: 48 aatcttgggtgtggaaac-tatcctggcgcaactgcgttcactctaacatttctttctgc 106
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 3209 aatcttgggtgtggaaacatatcctggcgcaac-gcgttcactctaacatttctttctgc 3151
Query: 107 gtattctaatgcaacactctgagttatccctattactgcatgcttcgttgctgtatacgg 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3150 gtattctaatgcaacactctgagttatccctattactgcatgcttcgttgctgtatacgg 3091
Query: 167 ggaaataccgggaataccaacaagaccattaactgcagagagattcaccatttttgcctc 226
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 3090 ggaaataccgggaataccaacaagaccattaactgcagagagattcaccaccgctgcctc 3031
Query: 227 agagtctggactcgaagagctttccatcaatggtagcgcatattttagtgtgtagaaggt 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3030 agagtctggactcgaagagctttccatcaatggtagcgcatattttagtgtgtagaaggt 2971
Query: 287 accattaatgttcgtatcaatgacttgcctccaggaatcaatatcgtaatcttcaattcc 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2970 accattaatgttcgtatcaatgacttgcctccaggaatcaatatcgtaatcttcaattcc 2911
Query: 347 tgtctgatgaggacctgtaattcctgcattatttactaaatagtgtaatgctccaaattc 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2910 tgtctgatgaggacctgtaattcctgcattatttactaaatagtgtaatgctccaaattc 2851
Query: 407 ttctcttatctcttggattaagtcttccaccgcttttgcaacagttacatccacttcttt 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2850 ttctcttatctcttggattaagtcttccaccgcttttgcaacagttacatccacttcttt 2791
Query: 467 cccaatcactctgctcccactgggatcaatattgcccgctgtctcttgcacttcggataa 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2790 cccaatcactctgctcccactgggatcaatattgcccgctgtctcttgcacttcggataa 2731
Query: 527 gtgtctcgaagtaatgaccacagtagctcctcttacaaaaagtgcacgagcaatgccctc 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2730 gtgtctcgaagtaatgaccacagtagctcctcttacaaaaagtgcacgagcaatgccctc 2671
Query: 587 tccaacccctgtggaggctcctgtaaccaaggctatttttccagcaaacgaatattctga 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2670 tccaacccctgtggaggctcctgtaaccaaggctatttttccagcaaacgaatattctga 2611
Query: 647 catggtacgatttcttatgacaaagatgctcaactgagaacttattgctgtacagtagat 706
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2610 catggtacgatgtcttatgacaaagatgctcaactgagaacttattgctgtacagtagat 2551
Query: 707 agatacgaaaggttagtactataccactaatgtcaagctctagcctgtacatgcggtggt 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2550 agatacgaaaggttagtactataccactaatgtcaagctctagcctgtacatgcggtggt 2491
Query: 767 ctgttgttaaattgaacataatggntgttttgcatcttcaacctttaaaaaaggggtacg 826
|||||||||||||||||||||||| || ||||||||||||||| |||||||| || |||
Sbjct: 2490 ctgttgttaaattgaacataatgg-tggtttgcatcttcaacc-ttaaaaaaaggtaacg 2433
Query: 827 c-atgcacattaagtgtctgtaagagccatac-anaacaacagac-acatagac-aggga 882
| ||||||||||||||||||||||||| | || | |||||||||| |||||||| ||| |
Sbjct: 2432 caatgcacattaagtgtctgtaagagcaaaacaaaaacaacagacaacatagacaaggaa 2373
Query: 883 ccatac-acgagattga 898
|||||| ||||||||||
Sbjct: 2372 ccatacaacgagattga 2356
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4966
Number of Sequences: 1807
Number of extensions: 4966
Number of successful extensions: 29
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)