BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZB07RM1.SCF screened BAC_end
(908 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1639 1628 0.0
>3x_Contig1639
Length = 14140
Score = 1628 bits (821), Expect = 0.0
Identities = 852/862 (98%), Gaps = 1/862 (0%)
Strand = Plus / Plus
Query: 47 gcttctaaaacc-ctcattagaatcgaaatatgagaacactccgagtatacgggaaaacc 105
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 8846 gcttctaaaaccactcattagaaacgaaatatgagaacactccgagtatacgggaaaacc 8905
Query: 106 aacaatgcatcagctgttttttgacccattcgtaaccatttttgtttctctaattgcttt 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8906 aacaatgcatcagctgttttttgacccattcgtaaccatttttgtttctctaattgcttt 8965
Query: 166 caatacaaccattgatatgccaagaagccctcaaaacttagatattctcttattttttac 225
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 8966 caatacaaccattgatatgccaagaagccctcaaaacttagatattctcttattcccgac 9025
Query: 226 cgaattgttattttgagactacatgaatgaggctaatatcttatgctcatagtaaactta 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9026 cgaattgttattttgagactacatgaatgaggctaatatcttatgctcatagtaaactta 9085
Query: 286 accaactacccttaagttggccttaccttgtagttgagaaggagcatctggagaaataac 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9086 accaactacccttaagttggccttaccttgtagttgagaaggagcatctggagaaataac 9145
Query: 346 atgaaaaaaaaacccttcttaacgggaaaatctggttggaatcatgagatctatgtagta 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9146 atgaaaaaaaaacccttcttaacgggaaaatctggttggaatcatgagatctatgtagta 9205
Query: 406 tagaatcagctgttttcgccagtccctgcctagcccatgagatatcgtaagaaattgatg 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9206 tagaatcagctgttttcgccagtccctgcctagcccatgagatatcgtaagaaattgatg 9265
Query: 466 cgtaccaagatggtaacgggtccgcactggaaaagtctcagtggagttaaagctgctgag 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9266 cgtaccaagatggtaacgggtccgcactggaaaagtctcagtggagttaaagctgctgag 9325
Query: 526 tgataacagcacaacgctcccggatctaacctgtaaattctatatcatgccaaagttttt 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9326 tgataacagcacaacgctcccggatctaacctgtaaattctatatcatgccaaagttttt 9385
Query: 586 tcgaaaagattgggtgtacggattatcagttaaagggaaacgcacaaaattattttcacg 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9386 tcgaaaagattgggtgtacggattatcagttaaagggaaacgcacaaaattattttcacg 9445
Query: 646 ttttgaggtacaatctgaaaagaccgttatgcatgtcaggggtaaattcaacgtacggga 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9446 ttttgaggtacaatctgaaaagaccgttatgcatgtcaggggtaaattcaacgtacggga 9505
Query: 706 aatatgcagtaaagaaaaaggcaccagatgcacgaaggtaccattttgcttcgtgaaata 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9506 aatatgcagtaaagaaaaaggcaccagatgcacgaaggtaccattttgcttcgtgaaata 9565
Query: 766 acgcanacagtcgtacgcttctgcagaactgttcgntaggtattttgaggcatatggctt 825
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 9566 acgcaaacagtcgtacgcttctgcagaactgttcgtaaggtattttgaggcatatggctt 9625
Query: 826 gggttgataacagatattgaataatcgaatagaagcagctaaagctgaccagttctcaga 885
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9626 gggttgataacagatattgaataatcgaatagaagcagctaaagctgaccagttctcaga 9685
Query: 886 aggttcaaagtggnaagggaga 907
||||||||||||| ||||||||
Sbjct: 9686 aggttcaaagtgggaagggaga 9707
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6604
Number of Sequences: 1807
Number of extensions: 6604
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 908
length of database: 10,358,551
effective HSP length: 16
effective length of query: 892
effective length of database: 10,329,639
effective search space: 9214037988
effective search space used: 9214037988
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)