BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZB08FM1.SCF screened BAC_end
(937 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1694 1548 0.0
>3x_Contig1694
Length = 18020
Score = 1548 bits (781), Expect = 0.0
Identities = 796/801 (99%)
Strand = Plus / Plus
Query: 96 caccaggcttcaagaagtatggaagatgaggccaagtaaagacggatgactttgaaccat 155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10218 caccaggcttcaagaagtatggaagatgaggccaagtaaagacggatgactttgaaccat 10277
Query: 156 cttcgaaaaagtctgataggttctgcaaggactctgaaacttcacctgtggagaaaactt 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10278 cttcgaaaaagtctgataggttctgcaaggactctgaaacttcacctgtggagaaaactt 10337
Query: 216 cttgaatgtactgtggtaatattgatgcaccgacaatattggcagcggcgatagagccaa 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10338 cttgaatgtactgtggtaatattgatgcaccgacaatattggcagcggcgatagagccaa 10397
Query: 276 taattccagcaaccttcattttgaatgctcgatttatcttagttctttagtcactttgta 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10398 taattccagcaaccttcattttgaatgctcgatttatcttagttctttagtcactttgta 10457
Query: 336 attgcaacgtgcttatagaacttaatcttacggggagaaacttttggaaaaaggatcaag 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10458 attgcaacgtgcttatagaacttaatcttacggggagaaacttttggaaaaaggatcaag 10517
Query: 396 gttcacttgtaagagtttgtagataaatctaactggttagaacagtgttaaatacgattg 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10518 gttcacttgtaagagtttgtagataaatctaactggttagaacagtgttaaatacgattg 10577
Query: 456 agaattaaggaaggggatattagtattaaccatgtgattgtacagagcaattattttgcg 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10578 agaattaaggaaggggatattagtattaaccatgtgattgtacagagcaattattttgcg 10637
Query: 516 aacccttttatttcgttcgtaaacggcaaattgcgatatcactttgcattgctatgtagt 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10638 aacccttttatttcgttcgtaaacggcaaattgcgatatcactttgcattgctatgtagt 10697
Query: 576 ctgaaaaatctgttgtccttcagtatatagactggacgggtaacctattttggactagtc 635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10698 ctgaaaaatctgttgtccttcagtatatagactggacgggtaacctattttggactagtc 10757
Query: 636 ttgcgctctagtcgttgttggtccctattgccaatgtgaggtacggatgcatacagagat 695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10758 ttgcgctctagtcgttgttggtccctattgccaatgtgaggtacggatgcatacagagat 10817
Query: 696 ccagacacagtacatagcgcaatgcatatttaaggacctcaattcgagagacaaaactgg 755
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10818 ccagacacagtacatagcgcaatgcatatttaaggacctcaattcgagagacaaaactgg 10877
Query: 756 ttacataatacggtttgacgtttattaattcttacaaacgacattactgcataattttga 815
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10878 ttacataatacggtttgacgtttattaattcttacaaacgacattactgcataattttga 10937
Query: 816 tattcgactcacatcattgcaagaagtagaacacgaaggttgttaggtttacgaaaacgt 875
||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 10938 tattcgactcacatcatagcaagaagtagaacacgaaggtggttagggttacgaaaacgt 10997
Query: 876 ttgctggagcgatattcccat 896
|||||| |||||||||||||
Sbjct: 10998 ttgctgaggcgatattcccat 11018
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5505
Number of Sequences: 1807
Number of extensions: 5505
Number of successful extensions: 24
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)