BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZB09RM1.SCF screened BAC_end
(950 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1647 1542 0.0
>3x_Contig1647
Length = 14353
Score = 1542 bits (778), Expect = 0.0
Identities = 879/901 (97%), Gaps = 10/901 (1%)
Strand = Plus / Plus
Query: 45 gctttctcacggtgataattttgtttca-tttgggtcgctttgggattagcagtttctct 103
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 4549 gctttctcacggtgataattttgttccaatttgggtcgctttgggattagcagtttctct 4608
Query: 104 aactttagtttgcgccttccttatgtctgaatctagacatgaaatggccaggttaaagtc 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4609 aactttagtttgcgccttccttatgtctgaatctagacatgaaatggccaggttaaagtc 4668
Query: 164 ccaaactaagttcctgagacgaagggagagcatcaatagtgccagatcacggcatttata 223
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
Sbjct: 4669 ccaaactaagttcctgagacgaagggagagcatcaatagtgccagatcacggcaatcaga 4728
Query: 224 tatggcaggtggagccaatcggtcatatacagtactgaaatatactgctctacaattctt 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4729 tatggcaggtggagccaatcggtcatatacagtactgaaatatactgctctacaattctt 4788
Query: 284 cgactttttgtctccagtgagaaatttatggattgctcctactgccgccggttccttggt 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4789 cgactttttgtctccagtgagaaatttatggattgctcctactgccgccggttccttggt 4848
Query: 344 tccaagatacatggttttattgcttgttggaatagatatcatgtttgtcatatctacagc 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4849 tccaagatacatggttttattgcttgttggaatagatatcatgtttgtcatatctacagc 4908
Query: 404 ggcatctataccggcgattgttttagcctttgttttcatgttcggttggagttcagagca 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4909 ggcatctataccggcgattgttttagcctttgttttcatgttcggttggagttcagagca 4968
Query: 464 attaggttactttgtgtctttaatgggactcggcaaggctgctgctttattagttctcgc 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4969 attaggttactttgtgtctttaatgggactcggcaaggctgctgctttattagttctcgc 5028
Query: 524 accgctggcactacatcttttgaagaaacgattcaaaacgttatcaaaatctgtggacca 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5029 accgctggcactacatcttttgaagaaacgattcaaaacgttatcaaaatctgtggacca 5088
Query: 584 cacagacatggttgtactacgtgtttcttccttttttattctactttcgctagtagtatt 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5089 cacagacatggttgtactacgtgtttcttccttttttattctactttcgctagtagtatt 5148
Query: 644 agtgattagtcgaagtgaatccgctgcatacgtatacgttctcctacaaatactgggaag 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5149 agtgattagtcgaagtgaatccgctgcatacgtatacgttctcctacaaatactgggaag 5208
Query: 704 catgctatcctcaacagtgcaatccacagttatcaaatacggatcgaaaagttctacagg 763
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5209 catgctatccccaacagtgcaatccacagttatcaaatacggatcgaaaagttctacagg 5268
Query: 764 tgagttattttggtgcaatggcattaattagaagttgtgcaatgatggtaatgccatcgt 823
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5269 tgagtta-tttggtgcaatggcattaattagaagttgtgcaatgatggtaatgccatcgt 5327
Query: 824 tatttttgaaattgtattcgagaacggggaattgggaccctttattttttcgtggtacat 883
||||||||||||||||||||||||| | ||||| |||||| ||| |||||||| ||||||
Sbjct: 5328 tatttttgaaattgtattcgagaacagtgaatttggacccctta-tttttcgt-gtacat 5385
Query: 884 tccccttgatattatgtaatcgggagcctgtctgatgnacagcgctttttggaaaattgt 943
| ||||| |||||||| ||| ||||||||||||||| |||||| |||| |||||||||
Sbjct: 5386 t-cccttagtattatgt-atc-ggagcctgtctgatg-acagcg--tttttgaaaattgt 5439
Query: 944 c 944
|
Sbjct: 5440 c 5440
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6281
Number of Sequences: 1807
Number of extensions: 6281
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 950
length of database: 10,358,551
effective HSP length: 16
effective length of query: 934
effective length of database: 10,329,639
effective search space: 9647882826
effective search space used: 9647882826
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)