BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZB10FM1.SCF screened BAC_end
(904 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1784 1554 0.0
>3x_Contig1784
Length = 28126
Score = 1554 bits (784), Expect = 0.0
Identities = 813/820 (99%), Gaps = 2/820 (0%)
Strand = Plus / Minus
Query: 85 ctcctctctttcatcaccaatagatgattctgccaattgtttagacacatcttcagtgac 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14596 ctcctctctttcatcaccaatagatgattctgccaattgtttagacacatcttcagtgac 14537
Query: 145 atcgccataccatttggtgtacaattctgggtggttttcttgtaaccaagctttacaacg 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14536 atcgccataccatttggtgtacaattctgggtggttttcttgtaaccaagctttacaacg 14477
Query: 205 tttgaatttactttttaattcacagtattcagcaggaaagtcacacacaccacagtatat 264
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14476 tttgaatttaccggaaaattcacagtattcagcaggaaagtcacacacaccacagtatat 14417
Query: 265 aacgttagtgagaggcattctgtatattcttctgtctctttaattaattctaacgtataa 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14416 aacgttagtgagaggcattctgtatattcttctgtctctttaattaattctaacgtataa 14357
Query: 325 atctcaaactgaatcaagcgtaacttaattacacgtaatgttattctgaacacacctcat 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14356 atctcaaactgaatcaagcgtaacttaattacacgtaatgttattctgaacacacctcat 14297
Query: 385 ctcatgcattagtgattttctgtttcaatatttttttcaatatttcactgtaaagatcga 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14296 ctcatgcattagtgattttctgtttcaatatttttttcaatatttcactgtaaagatcga 14237
Query: 445 ttcactttcttcagtaactacgtaatctactacttacatatactaagtgtttacttagac 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14236 ttcactttcttcagtaactacgtaatctactacttacatatactaagtgtttacttagac 14177
Query: 505 atgcacaaatagcggcgaactttggttacactcacactgaatacacttctttggaatggc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14176 atgcacaaatagcggcgaactttggttacactcacactgaatacacttctttggaatggc 14117
Query: 565 aacgtatgatgattttgctactgatactgtaataataacgtcaaagacaaaggacgtgtg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14116 aacgtatgatgattttgctactgatactgtaataataacgtcaaagacaaaggacgtgtg 14057
Query: 625 ctccaagcccttgtttgatgagatcgtaaataaggtgcaagaatgtgtggtggatactcg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14056 ctccaagcccttgtttgatgagatcgtaaataaggtgcaagaatgtgtggtggatactcg 13997
Query: 685 acagatttacggtgcggatgccgtgcgtgtcattacacttcctggattcaagagaatatt 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13996 acagatttacggtgcggatgccgtgcgtgtcattacacttcctggattcaagagaatatt 13937
Query: 745 ggtaacatcgcctaatattgaggcgagccgtgaagtgaaatccttgaacccattattccc 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13936 ggtaacatcgcctaatattgaggcgagccgtgaagtgaaatccttgaacccattattccc 13877
Query: 805 tgattgtaaattttgggttctccatcacgaatcacgtggctgaatcgaattcacaagctg 864
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13876 tgattgtaaa-tttgggttctccatcacgaatcacgtggctgaatcgaattcacaagctg 13818
Query: 865 gnatttccacacgctggcgctgacactgtgatgaatcacc 904
| ||||||||||||||||||||||||||||||||||||||
Sbjct: 13817 g-atttccacacgctggcgctgacactgtgatgaatcacc 13779
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6319
Number of Sequences: 1807
Number of extensions: 6319
Number of successful extensions: 66
Number of sequences better than 1.0e-20: 1
length of query: 904
length of database: 10,358,551
effective HSP length: 16
effective length of query: 888
effective length of database: 10,329,639
effective search space: 9172719432
effective search space used: 9172719432
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)