BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZB10RM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig977 868 0.0
3x_Contig498 664 0.0
>3x_Contig977
Length = 3887
Score = 868 bits (438), Expect = 0.0
Identities = 444/446 (99%)
Strand = Plus / Plus
Query: 51 gcttgaagaattggaggcacaatttgccaaagagttacaaaagagaattcaagaacttga 110
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 3248 gcttgaagaattggaggcacaatctgccaaagagttacaaaagagaattcaagaacttga 3307
Query: 111 aagaaaggctattgaattgaagatgaaggaaaagctactaagacaaaactcacatagtca 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3308 aagaaaggctattgaattgaagatgaaggaaaagctactaagacaaaactcacatagtca 3367
Query: 171 atctcaagaatctatccagactaatacaactaaacaaaattcaacttctggaggtgctta 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3368 atctcaagaatctatccagactaatacaactaaacaaaattcaacttctggaggtgctta 3427
Query: 231 cattaagaaagaggaaacctataacgatttagcttcgataatcagcaaaaaagaatgaat 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3428 cattaagaaagaggaaacctataacgatttagcttcgataatcagcaaaaaagaatgaat 3487
Query: 291 tcagtcttgatatctttctttggcatttttgtaagtcgaagtgtttggttcctgaaacga 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3488 tcagtcttgatatctttctttggcatttttgtaagtcgaagtgtttggttcctgaaacga 3547
Query: 351 tttcatatgtaatttaaacaatattgattattttgtatattgcaaacggtcacgtctaga 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3548 tttcatatgtaatttaaacaatattgattattttgtatattgcaaacggtcacgtctaga 3607
Query: 411 ttgatctgctacctgtttccaaatttgatgagtttaagatggtgatgtaaaaatcagaaa 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3608 ttgatctgctacctgtttccaaatttgatgagtttaagatggtgatgtaaaaatcagaaa 3667
Query: 471 aatatacgtactgttacaggtatata 496
|||| |||||||||||||||||||||
Sbjct: 3668 aataaacgtactgttacaggtatata 3693
>3x_Contig498
Length = 2351
Score = 664 bits (335), Expect = 0.0
Identities = 397/412 (96%), Gaps = 5/412 (1%)
Strand = Plus / Plus
Query: 510 taataatgagttaaggtattttcgtgccacttatcaataaatggaatttatctgttcaga 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 taataatgagttaaggtattttcgtgccacttatcaataaatggaatttatctgttcaga 591
Query: 570 tgacatagtattatgagataaaaaagattggtgaaaaatttatgttcatccagtgcttca 629
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 592 tgacatagtattatgagataaaaaagattggtggggaatttatgttcatccagtgcttca 651
Query: 630 agataaaaaatagctagtgtaactggagagaactaagaaaaccgaaaaatgcaaaataat 689
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 agatgggaaatagctagtgtaactggagagaactaagaaaaccgaaaaatgcaaaataat 711
Query: 690 gttcccgatggcaattaaaaacatcaagaaacaacattcattcagcgacgatgagaaaag 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 gttcccgatggcaattaaaaacatcaagaaacaacattcattcagcgacgatgagaaaag 771
Query: 750 gcactgg-gggaaataataggaaaagagatttaaccgaattgaanaatggttgcaaaata 808
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 772 gcactggcgggaaataataggaaaagagatttaaccgaattgaaaaatggttgcaaaata 831
Query: 809 acattaaagagttggaaacanagacat-attgatcaataaagacttcaagtgcgaaacat 867
|||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||
Sbjct: 832 acattaaagagttggaaaca-agacataattgatcaataaagacttcaagtgcg-aacat 889
Query: 868 -agtcattttaaccacgcanaaaagggttatgacgacgtanatatgaagtgt 918
|||||||||||| ||||| |||||||||||||||||||| |||||||||||
Sbjct: 890 aagtcattttaacaacgcaaaaaagggttatgacgacgtaaatatgaagtgt 941
Score = 228 bits (115), Expect = 2e-59
Identities = 205/235 (87%)
Strand = Plus / Plus
Query: 140 aaaagctactaagacaaaactcacatagtcaatctcaagaatctatccagactaatacaa 199
|||||||||||| |||||||||||||| |||||||||| |||||||||| ||||||||||
Sbjct: 162 aaaagctactaacacaaaactcacatattcaatctcaacaatctatccacactaatacaa 221
Query: 200 ctaaacaaaattcaacttctggaggtgcttacattaagaaagaggaaacctataacgatt 259
|||||||||||||||||||| || ||||||||||||| ||| | ||||||||||| |||
Sbjct: 222 ctaaacaaaattcaacttctagacgtgcttacattaacaaataaaaaacctataaccatt 281
Query: 260 tagcttcgataatcagcaaaaaagaatgaattcagtcttgatatctttctttggcatttt 319
|| |||| ||||||||||||||| ||| |||||| |||| |||||||||||| |||||||
Sbjct: 282 tatcttccataatcagcaaaaaataatcaattcactcttaatatctttctttagcatttt 341
Query: 320 tgtaagtcgaagtgtttggttcctgaaacgatttcatatgtaatttaaacaatat 374
| ||| || || | ||| |||||| |||| || |||||| ||| ||||||||||
Sbjct: 342 tctaattctaattttttcgttcctcaaaccatctcatatataacataaacaatat 396
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,404
Number of Sequences: 1807
Number of extensions: 13404
Number of successful extensions: 1287
Number of sequences better than 1.0e-20: 2
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)