BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZB12FM1.SCF screened BAC_end
(948 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1228 914 0.0
3x_Contig1177 202 9e-52
>3x_Contig1228
Length = 5992
Score = 914 bits (461), Expect = 0.0
Identities = 500/513 (97%)
Strand = Plus / Minus
Query: 84 tacttctcgtcgttttgatccaatggagagagttgagatatatactgtaaggggattctt 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 tacttctcgtcgttttgatccaatggagagagttgagatatatactgtaaggggattctt 454
Query: 144 tgtaaaataattttagtttgcgttatagataacaaaggagtttccgggtatttctcagcg 203
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 453 tgtaaaataattttagtttgcgttaaagataacaaaggagtttccgggtatttctcagcg 394
Query: 204 ccaagtctattcctttcctaagcagcatcgaaaaattcattcattctctcgtacttcttc 263
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ccaagtctatacctttccaaagcagcatcgaaaaattcattcattctctcgtacttcttc 334
Query: 264 tcttcgtcatcggtttcttccggaaggaaaactgttagctctgccaaagcctgcgcataa 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 tcttcgtcatcggtttcttccggaaggaaaactgttagctctgccaaagcctgcgcataa 274
Query: 324 atagagtgaaacaaatcgctcagttttatagtgctatcattgtcctgaagacgcaataat 383
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 atagagtgaacaaaatcgctcagttttatagtgctatcattgtcctgaagacgcaataat 214
Query: 384 ctgtcacattcgtgcactacaccatttaacaatagctgattatctttatccttcaggaaa 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 ctgtcacattcgtgcactacaccatttaacaatagctgattatctttatccttcaggaaa 154
Query: 444 gtttcccacaaaccctttagttggactaactcatcatcggcatcctcgttttcatccaat 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 gtttcccacaaaccctttagttggactaactcatcatcggcatcctcgttttcatccaat 94
Query: 504 gcaatttcaatctggtttgctgcagatggtgctggtaccgttccctcagaagattgctct 563
| |||| |||||||||| ||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 93 gaaattcaaatctggtttcctgaagatggtgctggtaccgttccctcaaaagattgctct 34
Query: 564 tctggcacagcaactttttgcttcttttgtttc 596
|||||||||| | ||||||||||||||||||||
Sbjct: 33 tctggcacagaacctttttgcttcttttgtttc 1
>3x_Contig1177
Length = 4667
Score = 202 bits (102), Expect = 9e-52
Identities = 172/194 (88%), Gaps = 1/194 (0%)
Strand = Plus / Plus
Query: 752 ataactgcatgtatctctaatctcatctcgtaaaatgtgtcgtttaaatataatgtacca 811
|||||||||||||||||||||||||||||| |||| ||| ||| ||| | | || ||||
Sbjct: 4 ataactgcatgtatctctaatctcatctcggaaaaagtggcgtgtaataaaattgaacca 63
Query: 812 ttgcacgcttcaatctgatgcttactggcacggcctgtcagctgattc-atactgtattc 870
| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 64 tgccacgctcaaatctgatgcttactggcacggcctgtcagctgattccatactgtattc 123
Query: 871 gtgaaaggcgatttgtaaaaagatatgtgaatctgagatctgaagtcccgtgtattgttt 930
||||||||||||||| |||| | ||||||||||||||||||||||| ||||||| ||
Sbjct: 124 gtgaaaggcgatttgaaaaagaaaatgtgaatctgagatctgaagtcacgtgtatgtatt 183
Query: 931 tatacacgtgactt 944
||||||||||||||
Sbjct: 184 tatacacgtgactt 197
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6719
Number of Sequences: 1807
Number of extensions: 6719
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 2
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)