BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZC02FM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig681 1554 0.0
>3x_Contig681
Length = 3369
Score = 1554 bits (784), Expect = 0.0
Identities = 838/853 (98%), Gaps = 3/853 (0%)
Strand = Plus / Plus
Query: 87 ttcgataagcaacccggattctttgctcaatttacaaacagtaacgggtataaaatttta 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 ttcgataagcaacccggattctttgctcaatttacaaacagtaacgggtataaaatttta 750
Query: 147 ctcagtatactctcaactcattcgatcagtgaagcggagctattaacaacaattcttaac 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 ctcagtatactctcaactcattcgatcagtgaagcggagctattaacaacaattcttaac 810
Query: 207 gtatctgcttccaatggcacagtgaaaagggacctgttttataagaatatcctatctccg 266
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 gtatctgcttccaaaggcacagtgaaaagggacctgttttataagaatatcctatctccg 870
Query: 267 cctgacgatggaatctcacttttctctcattcagtggttattaacttgttagattctttt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871 cctgacgatggaatctcacttttctctcattcagtggttattaacttgttagattctttt 930
Query: 327 attaagagaaatcccttcgccatccaagaatttttgctaactttcattgaatatctcaaa 386
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 931 attaagagaaatccct-cgccatccaagaatttttgctaactttcattgaatatctcaaa 989
Query: 387 aaaatgcaccaaagaaatcctaatcatatccttttcacatctccttatcctatcattcaa 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 990 aaaatgcaccaaagaaatcctaatcatatccttttcacatctccttatcctatcattcaa 1049
Query: 447 agtatcttcggattacaaatgaatc-ttgaaatgttggcggtggaaaagttattaccaac 505
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1050 agtatcttcggattacaaatgaatccttgaaatgttggcggtggaaaagttattaccaac 1109
Query: 506 agtaaacgtatgcaacaaatcgctactagcagacattattgttcagaagatgaaaactta 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1110 agtaaacgtatgcaacaaatcgctactagcagacattattgttcagaagatgaaaactta 1169
Query: 566 cgatccagaatcattcaaaactctcctaagttatattgttagttacagcgaaaatagtaa 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1170 cgatccagaatcattcaaaactctcctaagttatattgttagttacagcgaaaatagtaa 1229
Query: 626 gaggccgaaaagttctcaaatatgccaaaaaatggggctcgtatttttaatagtgcctag 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1230 gaggccgaaaagttctcaaatatgccaaaaaatggggctcgtatttttaatagtgcctag 1289
Query: 686 aatactaaaaagactatctgctttgtctttcactgtggaaaaggaccactcanaactagt 745
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1290 aatactaaaaagactatctgctttgtctttcactgtggaaaaggaccactcaaaactagt 1349
Query: 746 gtttgtagaaaatattctacaccttgntagcatttcatcggcttcttgggaagtccatga 805
|||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct: 1350 gtttgtagaaaatattctacaccttgtaagcatttcatcggcttcttggaaagtccatga 1409
Query: 806 tgcatcctgggaggccctcattaataccaatttagtaattctcaaagccagagaattgat 865
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1410 tgcatcctgggaggccctcattaataccaatttagtaattctcaaagccagagaattga- 1468
Query: 866 tttccaaatcggattttgagtctttctttcaaacngacattctttgaaatctcaatttag 925
|||||||||||||||||||||||| ||| || || ||||| ||| |||||||||||| ||
Sbjct: 1469 tttccaaatcggattttgagtcttccttccagacggacatccttcgaaatctcaattcag 1528
Query: 926 tacaagaagagat 938
|||||||||||||
Sbjct: 1529 tacaagaagagat 1541
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7048
Number of Sequences: 1807
Number of extensions: 7048
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)