BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZC02RM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1681 1626 0.0
>3x_Contig1681
Length = 11798
Score = 1626 bits (820), Expect = 0.0
Identities = 872/885 (98%), Gaps = 4/885 (0%)
Strand = Plus / Minus
Query: 45 gcttaaacttaccaacaagacgtatagtaattctctt-acatgtaaagcttcaggcaaag 103
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 8704 gcttaaacttaccaacaagacgtaaagtaattctcttcacatgtaaagcttcaggcaaag 8645
Query: 104 aaaacactgtatcaccacgtagaacagtgggctcagcatctaacgcagaccctgacataa 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8644 aaaacactgtatcaccacgtagaacagtgggctcagcatctaacgcagaccctgacataa 8585
Query: 164 atttaacattcccatatttggaggcaattcgaatgtcaaatataatgggagtctttttag 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 8584 atttaacattcccatatttggaggcaattcgaatgtcaaatataatgggagtcttcttag 8525
Query: 224 aaacaccaccaatcccactggaactgttgatgttgttatggttggtcttgtggagcccag 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8524 aaacaccaccaatcccactggaactgttgatgttgttatggttggtcttgtggagcccag 8465
Query: 284 caaacattgagaagtcagccaaaatccgaattcagttcgaagaggtaatttcacttgatc 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8464 caaacattgagaagtcagccaaaatccgaattcagttcgaagaggtaatttcacttgatc 8405
Query: 344 tatcacaatataataatcctcccctccaaatcaaaagaggagagagcactgctaatttga 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8404 tatcacaatataataatcctcccctccaaatcaaaagaggagagagcactgctaatttga 8345
Query: 404 tataaagctagaaaaaccacgtcaaagacttcttgttaggcctgtacctataaataggaa 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8344 tataaagctagaaaaaccacgtcaaagacttcttgttaggcctgtacctataaataggaa 8285
Query: 464 accgtaaaatcctttaagattaaatacagagtgaatatataccatattttgccctttaaa 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8284 accgtaaaatcctttaagattaaatacagagtgaatatataccatattttgccctttaaa 8225
Query: 524 tctcaacttactggttctttttgcaatctgtgattgcatatatattcttctttttttttt 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8224 tctcaacttactggttctttttgcaatctgtgattgcatatatattcttctttttttttt 8165
Query: 584 tatttacacttttctttcctctatttgatcgtcaaagaattgctcgagcccttgatttgc 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8164 tatttacacttttctttcctctatttgatcgtcaaagaattgctcgagcccttgatttgc 8105
Query: 644 ttctgccgtgcgacgttattgcgataaagcaaacaaccaacctatgtaatatatcggcac 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8104 ttctgccgtgcgacgttattgcgataaagcaaacaaccaacctatgtaatatatcggcac 8045
Query: 704 aaataaggctgagatagaagtgtgtctatccgaatggaactaagaggtaagaaattctga 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8044 aaataaggctgagatagaagtgtgtctatccgaatggaactaagaggtaagaaattctga 7985
Query: 764 tgttntagactaaccaccggaggaaattatttcttctatgtgatcggaaacagatatcgc 823
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7984 tgttttagactaaccaccggaggaaattatttcttctatgtgatcggaaacagatatcgc 7925
Query: 824 ctcgagtgcttattttttcgnactgcagttaataagggtttgccgnngatagttgctatt 883
|||||||||||| ||||||| |||||||||||| |||| |||||| |||||||||||||
Sbjct: 7924 ctcgagtgctta-tttttcggactgcagttaat-aggggttgccg-tgatagttgctatt 7868
Query: 884 acatctgttataggcatggtgtctgtactttcacgcatgctgtaa 928
||||||||||||||||| |||||||||||| |||||||||||||
Sbjct: 7867 acatctgttataggcattgtgtctgtacttcaacgcatgctgtaa 7823
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,376
Number of Sequences: 1807
Number of extensions: 12376
Number of successful extensions: 144
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)