BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZC03RM1.SCF screened BAC_end
(945 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1770 1653 0.0
>3x_Contig1770
Length = 29267
Score = 1653 bits (834), Expect = 0.0
Identities = 884/896 (98%), Gaps = 4/896 (0%)
Strand = Plus / Plus
Query: 44 ctttctttaggtgcgactgcacttgcgttgcaaggtgggtcacttttcggattattccac 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21521 ctttctttaggtgcgactgcacttgcgttgcaaggtgggtcacttttcggattattccac 21580
Query: 104 ctcggcgtattgaagggattgttggataggaatcttttacccaatatcatcaacgggacc 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21581 ctcggcgtattgaagggattgttggataggaatcttttacccaatatcatcaacgggacc 21640
Query: 164 tcgatgggcgcatgcgtcgcaagcatggcatgttgtctcagcgatggagagttttat-at 222
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 21641 tcgatgggcgcatgcgtcgcaagcatggcatgttgtctcagcgatggagagttggaagat 21700
Query: 223 ctattgaccggaaacagacttgtatctacaattaaacgcgatacagcgttaatgaaagaa 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21701 ctattgaccggaaacagacttgtatctacaattaaacgcgatacagcgttaatgaaagaa 21760
Query: 283 tgtggatacggcaacattgatgagcatttcaacatcggaactttagtagaaaatgtggtg 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21761 tgtggatacggcaacattgatgagcatttcaacatcggaactttagtagaaaatgtggtg 21820
Query: 343 cacaatggatactcaaaagacgtgtatctatttattaaattcattcaaaagtcggtcatc 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21821 cacaatggatactcaaaagacgtgtatctatttattaaattcattcaaaagtcggtcatc 21880
Query: 403 ggagatctaacttttgaagaggcgttccaaaggactgggaaggtattaaacattgttgtt 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21881 ggagatctaacttttgaagaggcgttccaaaggactgggaaggtattaaacattgttgtt 21940
Query: 463 catcccacgaataagaatatatgtcctaatttgttgaactatgtgacgaccccgaacgtt 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21941 catcccacgaataagaatatatgtcctaatttgttgaactatgtgacgaccccgaacgtt 22000
Query: 523 cttatatctagtgctattgattgtagtttcggaacaaacacaatcagtaagaatacttgg 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22001 cttatatctagtgctattgattgtagtttcggaacaaacacaatcagtaagaatacttgg 22060
Query: 583 ctattgggtaaaaacatagaaaacaaaatagtggactatttggatagaaaagagccccat 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22061 ctattgggtaaaaacatagaaaacaaaatagtggactatttggatagaaaagagccccat 22120
Query: 643 taccaggagttgaaattttcggcaccacaatacgttcaggattcgagccaattggaggcc 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22121 taccaggagttgaaattttcggcaccacaatacgttcaggattcgagccaattggaggcc 22180
Query: 703 ccatataccagactcacggaattattcaatgtaaacaattttattgtttccttagcaaga 762
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22181 ccatataccagactcacggaattattcaatgtaaacaattttattgtttccttagcaag- 22239
Query: 763 acccta-ttggcaccattagcattgaacgacttanaacacgatattagaacgtctgagta 821
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 22240 accctatttggcaccattagcattgaacgacttaaaacacgatattagaacgtctgagta 22299
Query: 822 ctattactancagaggttcccatacatcgatccaagatcatattcaccaatgcaactatc 881
||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 22300 ctattactacaagaggttcccatacatcgatccaggatcatattcaccaatgcaactatc 22359
Query: 882 caaggttaccaaattgggaccattagcattcaaattt-aataccacttggaaagga 936
||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct: 22360 caaggttaccaaattggaaccattagcattcaaatttaaataccacttggaaagga 22415
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6438
Number of Sequences: 1807
Number of extensions: 6438
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)