BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZC05RM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1132 860 0.0
3x_Contig1041 591 e-168
>3x_Contig1132
Length = 4143
Score = 860 bits (434), Expect = 0.0
Identities = 446/449 (99%), Gaps = 1/449 (0%)
Strand = Plus / Plus
Query: 484 tcaaagattccatcttgaactttctgacgaagaatgcgatgaatttgtggagaatgtgct 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcaaagattccatcttgaactttctgacgaagaatgcgatgaatttgtggagaatgtgct 60
Query: 544 aatttcaaaatctcttggtagtagatacacgaggctatatgatcactttcaattactcac 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aatttcaaaatctcttggtagtagatacacgaggctatatgatcactttcaattactcac 120
Query: 604 gcagggcatctatagttgagatcaaccaatagtaactaataccaaaatatataccacctt 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gcagggcatctatagttgagatcaaccaatagtaactaataccaaaatatataccacctt 180
Query: 664 actcaaaagatcaatccaaaacatacctcaggtaatcatagatatacttgccttgttgca 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 actcaaaagatcaatccaaaacatacctcaggtaatcatagatatacttgccttgttgca 240
Query: 724 atgttaccttaccatggagaaatagtttcactaattacataatccatcaagatattgntt 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 241 atgttaccttaccatggagaaatagtttcactaattacataatccatcaagatattgttt 300
Query: 784 gatggatagcatttctatgtggtgtaccagtatcgaaagtcacgtgctaacaatttactc 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gatggatagcatttctatgtggtgtaccagtatcgaaagtcacgtgctaacaatttactc 360
Query: 844 cgttttctcgatttcataatatctcactacgtaactgggctttcggcatctcttc-aacg 902
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 361 cgttttctcgatttcataatatctcactacgtaacttggctttcggcatctcttcaaacg 420
Query: 903 gcgagtgttactttctgactaaagataga 931
|||||||||||||||||||||||||||||
Sbjct: 421 gcgagtgttactttctgactaaagataga 449
>3x_Contig1041
Length = 5356
Score = 591 bits (298), Expect = e-168
Identities = 328/338 (97%)
Strand = Plus / Plus
Query: 48 gcttattagaccatttttcacgagtatatggagatccaaatggcttcaagttcagacatg 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4893 gcttattagaccatttttcacgagtatatggagatccaaatggcttcaagttcagacatg 4952
Query: 108 cacaagataattttgcttctagtttagccgcgtactccatcatctgctatttgctacgaa 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4953 cacaagataattttgcttctagtttagccgcgtactccatcatctgctatttgctacgaa 5012
Query: 168 ttaaggatagacacaacggtaacatcatgatagataatgagggacatgttgttcatatcg 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 5013 ttaaggatagacacaacggtaacatcatgatagataatgagggacatgttgttcacatcg 5072
Query: 228 attttggcttcatgttatctaattctcctggctctgtgggatttgaagctgctccgttta 287
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 5073 attttggcttcatgttatctaattaacctggctctgtgggatttgaagctgctccgttta 5132
Query: 288 aactcacatatgagtacgttgaagttatgggaggatcagaaagtgaaactttcaagaaat 347
||||||||||||||||||||||||||||||| || ||||| ||||| |||||||||||||
Sbjct: 5133 aactcacatatgagtacgttgaagttatgggcggctcagacagtgacactttcaagaaat 5192
Query: 348 ttgttgaactgtgcaaggctgcgtttaaagcgctaaga 385
|||| ||| |||||||||||| ||||||||||||||||
Sbjct: 5193 ttgtagaaatgtgcaaggctgagtttaaagcgctaaga 5230
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6775
Number of Sequences: 1807
Number of extensions: 6775
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 2
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)