BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZC06FM1.SCF screened BAC_end
(961 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1173 1542 0.0
>3x_Contig1173
Length = 7454
Score = 1542 bits (778), Expect = 0.0
Identities = 854/870 (98%), Gaps = 7/870 (0%)
Strand = Plus / Minus
Query: 86 tgatttcttttactgttctgtcaagatt-gaagtagacttcggtttaagaaaattttgag 144
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 4046 tgatttcttttactgttctgtcaagatttgaagtagacttcggtttaagaaaattttgag 3987
Query: 145 ctcatcgcatctcatcgcatagtttacagtgctagcagcattaagcttggaatgccagta 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3986 ctcatcgcatctcatcgcatagtttacagtgctagcagcattaagcttggaatgccagta 3927
Query: 205 aaactaccacaattacttcatactatcttgcaatcgtgcagaatcaatgtcacaattttt 264
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3926 aaactaccacaattacaacatactatcttgcaatcgtgcagaatcaatgtcacaattttt 3867
Query: 265 tgaatataaagacactataaaagagggtgatttggtgcttgcatggttgtccagggacaa 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3866 tgaatataaagacactataaaagagggtgatttggtgcttgcatggttgtccagggacaa 3807
Query: 325 tttgaagccaatcaccgtgaaagctggcgaggttttcaacactcgttatggtgctttctc 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3806 tttgaagccaatcaccgtgaaagctggcgaggttttcaacactcgttatggtgctttctc 3747
Query: 385 acattcagatatgattggaaaaccatttggttctcaaattgctattagaacgaagggaag 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3746 acattcagatatgattggaaaaccatttggttctcaaattgctattagaacgaagggaag 3687
Query: 445 taatagatttggtttcattcacgttctgcagccgaccccggaactatggtctatctcttt 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3686 taatagatttggtttcattcacgttctgcagccgaccccggaactatggtctatctcttt 3627
Query: 505 acctcacagaacccagattgtttatacaccagattcctcctatatcatgcagcggatgga 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3626 acctcacagaacccagattgtttatacaccagattcctcctatatcatgcagcggatgga 3567
Query: 565 gtgcaatcctagatctagggtcattgaagcaggtacggggtcaggttccttttctcatgc 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3566 gtgcaatcctagatctagggtcattgaagcaggtacggggtcaggttccttttctcatgc 3507
Query: 625 gtttgccagatctgcaggtcatttattctcatatgagttccacgaagtaagatacgaaca 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3506 gtttgccagatctgcaggtcatttattctcatatgagttccacgaagtaagatacgaaca 3447
Query: 685 agcgaagcaggaatttaaagaacatggactattggaagctggaaacactaccataacgca 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3446 agcgaagcaggaatttaaagaacatggactattggaagctggaaacactaccataacgca 3387
Query: 745 tagagatgtttgtaaagatggattttgaaattaaaaacggtgacaccacatcgcatgaat 804
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 3386 tagagatgtttgtaaagatgga-tttgaaattaaaaacggtgacaccacatcgcatgaat 3328
Query: 805 tcagaggtccaggagaaacgaaagtggagttgaatgctgactgcatatttttagatcttt 864
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 3327 tcagaggtccagaggaaacgaaggtggagttgaatgctgactgcatatttttagatcttc 3268
Query: 865 cagcaccatgggatgccatacccaattttgactttccgttatcttaaaggaaaaagaagg 924
||||||||||||||||||||||||| |||||| ||||||||||| ||||| |||||||||
Sbjct: 3267 cagcaccatgggatgccatacccaa-tttgac-ttccgttatctcaaagg-aaaagaagg 3211
Query: 925 taaaatttctgttgctttctccccatgcat 954
| |||| |||| ||| ||||||||||||||
Sbjct: 3210 t-aaatctctgctgc-ttctccccatgcat 3183
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6529
Number of Sequences: 1807
Number of extensions: 6529
Number of successful extensions: 89
Number of sequences better than 1.0e-20: 1
length of query: 961
length of database: 10,358,551
effective HSP length: 16
effective length of query: 945
effective length of database: 10,329,639
effective search space: 9761508855
effective search space used: 9761508855
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)