BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC13ZC08FM1.SCF screened BAC_end
         (932 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig485                                                         1540   0.0  

>3x_Contig485 
          Length = 1328

 Score = 1540 bits (777), Expect = 0.0
 Identities = 825/836 (98%), Gaps = 4/836 (0%)
 Strand = Plus / Plus

                                                                       
Query: 100 ggtcttctttt-aacagcatggactgggttaagatacaaactatgcaactactaaaacat 158
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9   ggtcttcttttcaacagcatggactgggttaagatacaaactatgcaactactaaaacat 68

                                                                       
Query: 159 atctttccattgacggaattatccagaccggagtttataggcgtcggggccgacttcatt 218
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  atctttccattgacggaattatccagaccggagtttataggcgtcggggccgacttcatt 128

                                                                       
Query: 219 tcaccattgctaaggctattacttggtgaattggaatccgacgcgttagaggtactcaat 278
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 tcaccattgctaaggctattacttggtgaattggaatccgacgcgttagaggtactcaat 188

                                                                       
Query: 279 accatccctaaggtatcggggagcaagatggataaagatgttctcagaataagtatggga 338
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 accatccctaaggtatcggggagcaagatggataaagatgttctcagaataagtatggga 248

                                                                       
Query: 339 aataaggacgcgaagaaggtatataacaagacagcgaccttatttggaatccccgaagag 398
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 aataaggacgcgaagaaggtatataacaagacagcgaccttatttggaatccccgaagag 308

                                                                       
Query: 399 agcggctggtctattcccatgcctgcgttgacggcggcatcgactcggcataatgtgcac 458
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 agcggctggtctattcccatgcctgcgttgacggcggcatcgactcggcataatgtgcac 368

                                                                       
Query: 459 gctgtatttacaacttgcgcggtaatggtcggtggggaagttgataatggcgattcaggt 518
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gctgtatttacaacttgcgcggtaatggtcggtggggaagttgataatggcgattcaggt 428

                                                                       
Query: 519 attctagaagagattgtcgaattccatgctgatggtggttatgtacaaggaacagatgaa 578
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 attctagaagagattgtcgaattccatgctgatggtggttatgtacaaggaacagatgaa 488

                                                                       
Query: 579 ttcggtgacgtggtatctgtcacagaagacaaagacccttcgttaagccatatgtgggcc 638
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ttcggtgacgtggtatctgtcacagaagacaaagacccttcgttaagccatatgtgggcc 548

                                                                       
Query: 639 gaattagacgatcttggctctttcttcaataaatcggattttatggaggaagaacaggaa 698
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 gaattagacgatcttggctctttcttcaataaatcggattttatggaggaagaacaggaa 608

                                                                       
Query: 699 gaagatgatgtctgattaagttttcataatcaagacttggaaacatctaacaggtgtata 758
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 gaagatgatgtctgattaagttttcataatcaagacttggaaacatctaacaggtgtata 668

                                                                       
Query: 759 actaattaaataagacttatattatttaagtttggagatagtaatcgcactaaagctatc 818
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 actaattaaataagacttatattatttaagtttggagatagtaatcgcactaaagctatc 728

                                                                       
Query: 819 gattagaaaagcagccaagtgagactatattagtgtctgttttggtatcatctaatggtt 878
           |||||||||   ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 729 gattagaaagcaagccaagtgagactata-tagtgtctgttttggtatcatctaatggtt 787

                                                                   
Query: 879 cctnctttgtctttgaatcatt-gcagttacaccaca-atattccgtggtaagtat 932
           ||| |||||||||||||||||| |||||||||||| | |||| | |||||||||||
Sbjct: 788 cctcctttgtctttgaatcattggcagttacaccagacatatacggtggtaagtat 843


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5617
Number of Sequences: 1807
Number of extensions: 5617
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)