BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC13ZC08RM1.SCF screened BAC_end
         (962 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1741                                                        1195   0.0  

>3x_Contig1741 
          Length = 21706

 Score = 1195 bits (603), Expect = 0.0
 Identities = 658/675 (97%), Gaps = 1/675 (0%)
 Strand = Plus / Plus

                                                                        
Query: 69   agtggagactggtgtatgagcgcgagtgttgttacgacgtggggatgctattttccgttg 128
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6544 agtggagactggtgtatgagcgcgagtgttgttacgacgtggggatgctattttccgttg 6603

                                                                        
Query: 129  tttcaccactcgtcttggacttagtagggttgcctctgtggcagggctaccacctgttat 188
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6604 tttcaccactcgtcttggacttagtagggttgcctctgtggcagggctaccacctgttat 6663

                                                                        
Query: 189  tggagcgctgctgaccaatttagatgtttcggaagataaatcttat-gtgattgcgtttg 247
            ||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||
Sbjct: 6664 tggagcgctgctgaccaatttagatgtttcggaagataaatctaattgggattgcgtttg 6723

                                                                        
Query: 248  cttttgtaatttttcactttcaagaagtttattcttaaaatattcagcttctttcttcac 307
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6724 cttttgtaatttttcactttcaagaagtttattcttaaaatattcagcttctttcttcac 6783

                                                                        
Query: 308  tagattcttttcaactgcaaaacgttcatccttttcctttctgttttcccagtgggatag 367
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6784 tagattcttttcaactgcaaaacgttcatccttttcctttctgttttcccagtgggatag 6843

                                                                        
Query: 368  ttgtgcttgtaatgaccagtgcgatatcgccgacagagatcggttcaataacgctattat 427
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6844 ttgtgcttgtaatgaccagtgcgatatcgccgacagagatcggttcaataacgctattat 6903

                                                                        
Query: 428  tctcacagtgtcctctgtgcgaggctcgatggtttccagatccgaaacagctttggctat 487
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6904 tctcacagtgtcctctgtgcgaggctcgatggtttccagatccgaaacagctttggctat 6963

                                                                        
Query: 488  atccaattctaatagtctagtatttctcaacgaatgctcggtgtcctgcagcacgtcata 547
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6964 atccaattctaatagtctagtatttctcaacgaatgctcggtgtcctgcagcacgtcata 7023

                                                                        
Query: 548  ttcggtctgcaattcatctgacaatagcgccatcgactgtgatctagacctaacattatt 607
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7024 ttcggtctgcaattcatctgacaatagcgccatcgactgtgatctagacctaacattatt 7083

                                                                        
Query: 608  atttcccgcagcagaagctgcatccagttcgtattctaacttcccagtttcttctgtagt 667
            ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 7084 atttcccgcagcagaagctgcatccagttcgtattctaacttcccaggttcttctggagt 7143

                                                                        
Query: 668  tattgtctggtttcttcctttttttcgcacacctgatctggcactattaccagtttactc 727
            |||||||||  |||||||| || |   ||||| ||| ||||||||||||| |||  ||||
Sbjct: 7144 tattgtctgcattcttcctcttgtatccacacttgaactggcactattacaagtagactc 7203

                           
Query: 728  acttttatcactcct 742
            |||||||||||||||
Sbjct: 7204 acttttatcactcct 7218


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8957
Number of Sequences: 1807
Number of extensions: 8957
Number of successful extensions: 95
Number of sequences better than 1.0e-20: 1
length of query: 962
length of database: 10,358,551
effective HSP length: 16
effective length of query: 946
effective length of database: 10,329,639
effective search space: 9771838494
effective search space used: 9771838494
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)