BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZC10FM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig806 1598 0.0
>3x_Contig806
Length = 2480
Score = 1598 bits (806), Expect = 0.0
Identities = 826/832 (99%), Gaps = 1/832 (0%)
Strand = Plus / Minus
Query: 86 ctgcggaacacctttcgttgaatattctatcctgcatatttatgctcttctacatctcct 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1797 ctgcggaacacctttcgttgaatattctatcctgcatatttatgctcttctacatctcct 1738
Query: 146 aaggagatgtccgaaataattggactgcagttctgaaacaggacaactatatgagtagtg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1737 aaggagatgtccgaaataattggactgcagttctgaaacaggacaactatatgagtagtg 1678
Query: 206 tggtattggttttaatatgaacaatttttactaacaatagacatcatttcgatggcattt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1677 tggtattggttttaatatgaacaatttttactaacaatagacatcatttcgatggcattt 1618
Query: 266 ttatttaggccggtattaaagcttacgaattgagaaccaagtccaaggaccaattggaac 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1617 ttatttaggccggtattaaagcttacgaattgagaaccaagtccaaggaccaattggaac 1558
Query: 326 aacaattggttgaattgaagaaggaattggccgaattgaaggttcaaaaattgtccagac 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1557 aacaattggttgaattgaagaaggaattggccgaattgaaggttcaaaaattgtccagac 1498
Query: 386 catctttgccaaaaatcaacactgtcagaaagaacattgctcgtgtcttgactgttatct 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1497 catctttgccaaaaatcaacactgtcagaaagaacattgctcgtgtcttgactgttatct 1438
Query: 446 ctcaaaaccaaagacaagctgtcagagaattgtacaagggtaagaagtaccaaccaaagg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1437 ctcaaaaccaaagacaagctgtcagagaattgtacaagggtaagaagtaccaaccaaagg 1378
Query: 506 acttgagagccaagaagaccagagctttgagaagagctttgaccaaattcgaagcttccc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1377 acttgagagccaagaagaccagagctttgagaagagctttgaccaaattcgaagcttccc 1318
Query: 566 aagttactgaaaagcaaagaaagaagcaaattgctttcccacaaagaaagtatgctatca 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1317 aagttactgaaaagcaaagaaagaagcaaattgctttcccacaaagaaagtatgctatca 1258
Query: 626 aggcttaagaaaccgttcttcctattacattattaagaacgttttttcatgttaaattag 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1257 aggcttaagaaaccgttcttcctattacattattaagaacgttttttcatgttaaattag 1198
Query: 686 tttacatctttctacataatctctaacatcattgttgtatttgagtacacgcattttgca 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1197 tttacatctttctacataatctctaacatcattgttgtatttgagtacacgcattttgca 1138
Query: 746 naatagacacagggtttctgtttaatctcatgttagaatgatcctctgcatggaatcgaa 805
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1137 aaatagacacagggtttctgtttaatctcatgttagaatgatcctctgcatggaatcgaa 1078
Query: 806 cgccacttgctgtgtcacttttagattatattgacgaaattttttacctacatactttat 865
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 1077 cgccacttgctgtgtcactttaagattatattgacgaaattttttacctacatacttatt 1018
Query: 866 ttagtggggtatgctattctttcttcgaacgctttanattttctgaattcca 917
|||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 1017 ttagtggggtatgctattctttcttcgaacgc-ttagattttctgaattcca 967
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7102
Number of Sequences: 1807
Number of extensions: 7102
Number of successful extensions: 70
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)