BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZC10RM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1676 1673 0.0
>3x_Contig1676
Length = 15800
Score = 1673 bits (844), Expect = 0.0
Identities = 870/879 (98%), Gaps = 1/879 (0%)
Strand = Plus / Minus
Query: 47 gctttactaaagtctaactgatatttcttcttttaataaatacaagagtatttatttggc 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12260 gctttactaaagtctaactgatatttcttcttttaataaatacaagagtatttatttggc 12201
Query: 107 gaaacagtttaaactatataccgaaaagaataactaagttgattatcttgtcaaattaga 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12200 gaaacagtttaaactatataccgaaaagaataactaagttgattatcttgtcaaattaga 12141
Query: 167 acggcttgataaagactggatgtacttttgatatatctcagtatattttcccttctgttc 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12140 acggcttgataaagactggatgtacttttgatatatctcagtatattttcccttctgttc 12081
Query: 227 agctgaatgttgaaggtgttgtagaatgtagatatcagtatccacagcggtggaagatag 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12080 agctgaatgttgaaggtgttgtagaatgtagatatcagtatccacagcggtggaagatag 12021
Query: 287 ctggaaactgaacaaagataaatacagattcaaagcgacatattccaattttctaatatt 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12020 ctggaaactgaacaaagataaatacagattcaaagcgacatattccaattttctaatatt 11961
Query: 347 tagaagagtagtcagaaactttgctttgcgactctcgcaaaataaacctaaaactgaaca 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11960 tagaagagtagtcagaaactttgctttgcgactctcgcaaaataaacctaaaactgaaca 11901
Query: 407 aactgggtttttgtactgttttttctgagaactgtatcattatgcatgattttcatacga 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11900 aactgggtttttgtactgttttttctgagaactgtatcattatgcatgattttcatacga 11841
Query: 467 taggaacgcttcctgcagaaaacttcaggcaacagactcattttttacccgcctttagcg 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11840 taggaacgcttcctgcagaaaacttcaggcaacagactcattttttacccgcctttagcg 11781
Query: 527 ttcaacgcactagttatacttggaggtaagtcacatcgttgtaataattatcttttagtg 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11780 ttcaacgcactagttatacttggaggtaagtcacatcgttgtaataattatcttttagtg 11721
Query: 587 tggtttgtgttaaagtgtgatttaatgcttatcgtgttcaatttaaactttcactgaatt 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11720 tggtttgtgttaaagtgtgatttaatgcttatcgtgttcaatttaaactttcactgaatt 11661
Query: 647 tcaggaattctttattgaataactatccataaatcgcattatctcaatcccttag-atac 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 11660 tcaggaattctttattgaataactatccataaatcgcattatctcaatcccttagaatac 11601
Query: 706 agaagaagaaagtacaaaaaatctatactaacacctgaatcggaagctagcanattgttg 765
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 11600 agaagaagaaagtacaaaaaatctatactaacacctgaatcggaagctagcaaattgttg 11541
Query: 766 aacattagaagtaattagaaaaataactgatttgatttcgattattctacaattgttttt 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 11540 aacattagaagtaattagaaaaataactgatttgatttcgattattctacaattggtttt 11481
Query: 826 tcagaacatangtggactcgccaacaatttggcgtgatgttctgaaaagcttcttagnna 885
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 11480 tcagaacataggtggactcgccaacaatttggcgtgatgttctgaaaagcttcttagaaa 11421
Query: 886 aagttgcatatgntactcctcaattaacttgggatacaa 924
| |||||||||| |||||||||||||||| |||||||||
Sbjct: 11420 atgttgcatatgttactcctcaattaactggggatacaa 11382
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7661
Number of Sequences: 1807
Number of extensions: 7661
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)