BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC13ZC12RM1.SCF screened BAC_end
         (952 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1540                                                        1663   0.0  

>3x_Contig1540 
          Length = 9505

 Score = 1663 bits (839), Expect = 0.0
 Identities = 892/909 (98%), Gaps = 1/909 (0%)
 Strand = Plus / Minus

                                                                        
Query: 45   cttgcataggtcgacagctgcttttgtgtgaccacgtctggccagaacaccgccttcttt 104
            |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 5308 cttgcataggtcgacagctgcttcagtgtgaccacgtctggccagaacaccgccttcttt 5249

                                                                        
Query: 105  ggctcttaatggcaccacatgaccaggcttcaagtaatcaatagcggtagtagtcttgtc 164
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5248 ggctcttaatggcaccacatgaccaggcttcaagtaatcaatagcggtagtagtcttgtc 5189

                                                                        
Query: 165  agcatgtttggaacacgttaatgcacgatcatgtgctgaaatccctgttgnggttccgng 224
            |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 5188 agcaagtttggaacacgttaatgcacgatcatgtgctgaaatccctgttgtggttccgtg 5129

                                                                        
Query: 225  tgcataatcacaagtaatggtatatgcggttccatgtctgtcatctgcgtaactttcaca 284
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5128 tgcataatcacaagtaatggtatatgcggttccatgtctgtcatctgcgtaactttcaca 5069

                                                                        
Query: 285  cgaaagatctttcaaaagaggtagatctaaacgatctgcccattcgttggtcattggtgc 344
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5068 cgaaagatctttcaaaagaggtagatctaaacgatctgcccattcgttggtcattggtgc 5009

                                                                        
Query: 345  acaaacatacccagaagaataacgtatcaagaaggccatttgttcggtggtgatcgcatt 404
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5008 acaaacatacccagaagaataacgtatcaagaaggccatttgttcggtggtgatcgcatt 4949

                                                                        
Query: 405  agccgcacagattaggtcaccttcgttctcacgtgactcgtcatccatcacaataacgaa 464
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4948 agccgcacagattaggtcaccttcgttctcacgtgactcgtcatccatcacaataacgaa 4889

                                                                        
Query: 465  cttattctgtctgaacttttctatggctacttcgatatcggtgaatatcatttttattgt 524
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4888 cttattctgtctgaacttttctatggctacttcgatatcggtgaatatcatttttattgt 4829

                                                                        
Query: 525  attataacttgctattggattaacctgattttaattgaagtgtaagataacaacgtttgg 584
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4828 attataacttgctattggattaacctgattttaattgaagtgtaagataacaacgtttgg 4769

                                                                        
Query: 585  cttaactagtcttaaccgttcactttactgtgactatggaataaatagatatctcaaaat 644
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4768 cttaactagtcttaaccgttcactttactgtgactatggaataaatagatatctcaaaat 4709

                                                                        
Query: 645  agcctccgtacttccactggtatctttgaaagtgtccgatctcactgcttttatacactt 704
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4708 agcctccgtacttccactggtatctttgaaagtgtccgatctcactgcttttatacactt 4649

                                                                        
Query: 705  aaacaatgaaatacagtcataaacaagagtcataagtaaaccatttcaattctttaccag 764
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4648 aaacaatgaaatacagtcataaacaagagtcataagtaaaccatttcaattctttaccag 4589

                                                                        
Query: 765  tcttactttcaaagtgtgtctaattttgcactcttttgaaatatcaacagattggtttca 824
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 4588 tcttactttcaaagtgtgtctaattttgcactctttcgaaatatcaacagattggtttca 4529

                                                                        
Query: 825  tgctttaaacccataatgactaaatcttccggtcctccattgtaatgccgtagaaaattt 884
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 4528 tgctttaaacccataatgactaagtcttccggtcctccattgtaatgccgtagaaaattt 4469

                                                                        
Query: 885  tttttttccaacaaaaattactaattatcacatgacctacctttgcaagccattta-tta 943
            ||| || |||  |||| |||||||| ||||||||||||||||| || ||||||||| | |
Sbjct: 4468 tttcttcccacaaaaatttactaataatcacatgacctaccttcgcgagccatttagtaa 4409

                     
Query: 944  ttgtaacag 952
            |||||||||
Sbjct: 4408 ttgtaacag 4400


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8021
Number of Sequences: 1807
Number of extensions: 8021
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 952
length of database: 10,358,551
effective HSP length: 16
effective length of query: 936
effective length of database: 10,329,639
effective search space: 9668542104
effective search space used: 9668542104
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)