BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZD02FM1.SCF screened BAC_end
(957 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1265 1511 0.0
>3x_Contig1265
Length = 8324
Score = 1511 bits (762), Expect = 0.0
Identities = 809/820 (98%), Gaps = 4/820 (0%)
Strand = Plus / Plus
Query: 89 gcatgtactttcatacattatgtcatcttcgaaaaagaatgaagtggccccacctaaaat 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30 gcatgtactttcatacattatgtcatcttcgaaaaagaatgaagtggccccacctaaaat 89
Query: 149 ttgttcggtacgtgtctgccagacatcagacccatttgttgcattgtacatatacgcgca 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90 ttgttcggtacgtgtctgccagacatcagacccatttgttgcattgtacatatacgcgca 149
Query: 209 tccgccaagaacattttcatggttatagctccattcgtatttcacaatggaagtacagtt 268
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 tccgccaagaacaacaccatggttatagctccattcgtatttcacaatggaagtacagtt 209
Query: 269 atcgtcgatagtcgcaccatcgaaaacattggcctcttccttcattactacgaaatcaat 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 atcgtcgatagtcgcaccatcgaaaacattggcctcttccttcattactacgaaatcaat 269
Query: 329 atcgacaagccaatcgaagaccttttctgctacctccaaataagtagtgttacccgtata 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 atcgacaagccaatcgaagaccttttctgctacctccaaataagtagtgttacccgtata 329
Query: 389 tcttccgagtcgtgctgccaattggaagagacaaccattggaaattgtgttcttataatt 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tcttccgagtcgtgctgccaattggaagagacaaccattggaaattgtgttcttataatt 389
Query: 449 gtatcccgagttccaggtaaagatttgccatcttaagccaccgttacaatggtctgaatc 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 gtatcccgagttccaggtaaagatttgccatcttaagccaccgttacaatggtctgaatc 449
Query: 509 ccaacgtgagtacatttgattgaaaacagcttgtaccatggccaaccagccaggtgtgcc 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 ccaacgtgagtacatttgattgaaaacagcttgtaccatggccaaccagccaggtgtgcc 509
Query: 569 gtcttccttcggatttgtgaaatttctttccacggcagtcattactgtcaaagcccaaac 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 gtcttccttcggatttgtgaaatttctttccacggcagtcattactgtcaaagcccaaac 569
Query: 629 accttgatcatcattaccttccaccatagtttgattacttggcatgtaatcataatcgga 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 accttgatcatcattaccttccaccatagtttgattacttggcatgtaatcataatcgga 629
Query: 689 cccagtttgtgccatcaaagcatcgtaaagcatatcttcatacgatgtattttgacatag 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 cccagtttgtgccatcaaagcatcgtaaagcatatcttcatacgatgtattttgacatag 689
Query: 749 ataccaattttcaatcatacctccgaagacaagtccggcttcccaccaatagtatggcga 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 ataccaattttcaatcatacctccgaagacaagtccggcttcccaccaatagtatggcga 749
Query: 809 tacanacataccgacagtcccaccatatacgtcacctttcatagtaatcactaataccct 868
|||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 750 tacaaacataccgacagtcccaccatatacgtcacc-ttcatagtaatcactaata-cct 807
Query: 869 tgttggatcaaagcagntgcttgtacatattcgacgactt 908
||||| |||||||||| ||| |||||||| ||||||||||
Sbjct: 808 tgttgaatcaaagcagttgc-tgtacata-tcgacgactt 845
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5316
Number of Sequences: 1807
Number of extensions: 5316
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 957
length of database: 10,358,551
effective HSP length: 16
effective length of query: 941
effective length of database: 10,329,639
effective search space: 9720190299
effective search space used: 9720190299
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)