BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZD02RM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1776 1620 0.0
>3x_Contig1776
Length = 26138
Score = 1620 bits (817), Expect = 0.0
Identities = 881/897 (98%), Gaps = 4/897 (0%)
Strand = Plus / Plus
Query: 42 gctttgaagcgtaaagaggctattatgcgtaagtcgaccgtcgaatggcgtgaacgtaaa 101
|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 13780 gctttgaagcgtaaagaggctaagaagcgtaagtcgaccgtcgaatggcgtgaacgtaaa 13839
Query: 102 caagtggtagaaaacactgttgccgaaagacagaagagaagagaggaaaatctacagatt 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13840 caagtggtagaaaacactgttgccgaaagacagaagagaagagaggaaaatctacagatt 13899
Query: 162 agaaaggacaataaaggtaagaagaagagcaaacaacagaagatgaagagaaa-ttctag 220
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 13900 agaaaggacaataaaggtaagaagaagagcaaacaacagaagatgaagagaaaattcaag 13959
Query: 221 ggaactgcccatttgaagaaaagagcaggatttgaaggacgtatgaaaagtgtcaagaag 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13960 ggaactgcccatttgaagaaaagagcaggatttgaaggacgtatgaaaagtgtcaagaag 14019
Query: 281 aaatgagccttaatcaactaatattctccatccaacaaataaaagcataatatcatattt 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14020 aaatgagccttaatcaactaatattctccatccaacaaataaaagcataatatcatattt 14079
Query: 341 catcctttcaagttatagattaac-cttttacttttac-ttttgcatctctatttttata 398
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct: 14080 catcctttcaagttatagattaacgcttttacttttaccttttgcatctctatttttata 14139
Query: 399 tactgacacccaatgatatataaaaataaatataatcaaacccagaatgtaataatgcat 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14140 tactgacacccaatgatatataaaaataaatataatcaaacccagaatgtaataatgcat 14199
Query: 459 aaaatctctattaccatgtagtctttaataatggatttcagaagccaatgtgcggttatt 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14200 aaaatctctattaccatgtagtctttaataatggatttcagaagccaatgtgcggttatt 14259
Query: 519 tcttttcattcattttaaactgcgttcgaaaaatcatgaaaatggttcagacgcaatagt 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14260 tcttttcattcattttaaactgcgttcgaaaaatcatgaaaatggttcagacgcaatagt 14319
Query: 579 atagatgaaataaggtatctcgatgagatgaggttgaagaggttcactccagcgaaacaa 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14320 atagatgaaataaggtatctcgatgagatgaggttgaagaggttcactccagcgaaacaa 14379
Query: 639 ggcaacgttgcagaagagaaagattctatattgcataatgctgaatgtgataacctgtcg 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14380 ggcaacgttgcagaagagaaagattctatattgcataatgctgaatgtgataacctgtcg 14439
Query: 699 aagtcgattaagtttactcgttacaccaagacaacttcgatatatacgaaccataagttt 758
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 14440 aagtcgattaagtttactcgttacaccaagacaacttcgatatatacgaaccaaaagttt 14499
Query: 759 atcaaatactatctccactataaagacaaatgctgataatgcaatgcatatacaggagaa 818
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 14500 atcaaatactatctccactataaagaaaaatgctgataatgcaatgcatatacaggagaa 14559
Query: 819 gcaagacattgctgtttttgaaaaacatgacttcacttgagttgatataaactctggtgt 878
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 14560 gcaagacattgctgttttgaaaaaacatgacttcactgaagttgatataaactctggtgt 14619
Query: 879 gaattcttggttcttatcatatttagcggggacaaatcc-ggcttcaagaattcaaa 934
||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||
Sbjct: 14620 gaattcttggttcttatcatatttagcggtgacaaatccgggcttcaagaaatcaaa 14676
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9880
Number of Sequences: 1807
Number of extensions: 9880
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)