BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZD03FM1.SCF screened BAC_end
(953 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig908 1493 0.0
>3x_Contig908
Length = 2758
Score = 1493 bits (753), Expect = 0.0
Identities = 813/832 (97%), Gaps = 12/832 (1%)
Strand = Plus / Minus
Query: 91 gtataatggttttgaatccagccatgaacccccaaagtgctcctttccattgatagaatg 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1146 gtataatggttttgaatccagccatgaacccccaaagtgctcctttccattgatagaatg 1087
Query: 151 atctggggagcccaataaatctagaatcctccatatttgatcggtttcgtcagaaccggg 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1086 atctggggagcccaataaatctagaatcctccatatttgatcggtttcgtcagaaccggg 1027
Query: 211 aaatagtggtgattttgtggctagttcgacaacaacacaaccatacgcccaaatatccaa 270
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1026 aaatagtggtgaaaaggtggctagttcgacaacaacacaaccatacgcccaaatatccaa 967
Query: 271 cggtttggaatagtatccttttctaagaagaatttctggtgacctataccaacgggtcga 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 966 cggtttggaatagtatccttttctaagaagaatttctggtgacctataccaacgggtcga 907
Query: 331 cacataggtggtataaggtgatctgttattcacatgtcttgccaaaccgtaatcagccaa 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906 cacataggtggtataaggtgatctgttattcacatgtcttgccaaaccgtaatcagccaa 847
Query: 391 tttcaccacgtaattatccgaataattatcatcttccaaccatttcttgctgaagtacct 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 tttcaccacgtaattatccgaataattatcatcttccaaccatttcttgctgaagtacct 787
Query: 451 atgagatggcgatatcaagatattctccggtttgatatctctatggaaaaaatcgtgatc 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 atgagatggcgatatcaagatattctccggtttgatatctctatggaaaaaatcgtgatc 727
Query: 511 atgaatatgtttaattcctgctaatatttggaataatatcgacctcaaagtaggtaggga 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 atgaatatgtttaattcctgctaatatttggaataatatcgacctcaaagtaggtaggga 667
Query: 571 aaacactcttcttttcctatgtttcatcaattgataaatgttctgctccatgcattccat 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 aaacactcttcttttcctatgtttcatcaattgataaatgttctgctccatgcattccat 607
Query: 631 tacaatgtgaaggtgatacaaagaatcatcaatgaacatctcgtatatggtaaccaaatt 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 tacaatgtgaaggtgatacaaagaatcatcaatgaacatctcgtatatggtaaccaaatt 547
Query: 691 tttgtgtgcaggaatttgcaatatgaatttgatctctctgactcttgtatagtcatgcaa 750
||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 ttt----------atttgcaatatgaatttgatctctctgactcttgtatagtcatgcaa 497
Query: 751 tgttggtaatctattcatcattgttttgattgccactataccctttttcttatagtacca 810
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 tgttggtaatctattcatcattgttttgattgccactataccctttttcttatagtacca 437
Query: 811 gtttttcttgttcgacgttttctgattagagtttgattcatcaaagtttctgggtacatt 870
| ||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||
Sbjct: 436 g-ttttcttgttcgacg-tttctgataagagtttgatccatcaaagtttctgggtacatt 379
Query: 871 gaggaaatttgggtggctgaactgttcatatcgtacattggctcggccaatg 922
|||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 378 gaggaaatttgggtggctgaactgttcatatcgtacattgtctcggccaatg 327
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7175
Number of Sequences: 1807
Number of extensions: 7175
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 953
length of database: 10,358,551
effective HSP length: 16
effective length of query: 937
effective length of database: 10,329,639
effective search space: 9678871743
effective search space used: 9678871743
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)