BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZD03RM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1268 1637 0.0
>3x_Contig1268
Length = 6710
Score = 1637 bits (826), Expect = 0.0
Identities = 868/878 (98%), Gaps = 3/878 (0%)
Strand = Plus / Plus
Query: 46 cttcttgcgtggaaatgtaacggtagacaatatacagaagtcatggctccatttatgtaa 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1825 cttcttgcgtggaaatgtaacggtagacaatatacagaagtcatggctccatttatgtaa 1884
Query: 106 ctgcgatggagacatattcttctgattttcgaaatgtatcggtatggggggggggctttc 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1885 ctgcgatggagacatattcttctgattttcgaaatgtatcggtatggggggggggctttc 1944
Query: 166 ttcagtacaaagatttctaataacagataagtgagtccctatgtttcagatgcttttatt 225
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
Sbjct: 1945 ttcagtacaaagatttctaataacagataagtgagtccctatgtttcagatgctctcagt 2004
Query: 226 acaacccaattctcaatttcaatggtatctgatgcagagaagtatacacgagatactaaa 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2005 acaacccaattctcaatttcaatggtatctgatgcagagaagtatacacgagatactaaa 2064
Query: 286 tgccgataccctttatatatacacgggcatatactaccatcgtcaaagtttatgtgattc 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2065 tgccgataccctttatatatacacgggcatatactaccatcgtcaaagtttatgtgattc 2124
Query: 346 attggaaaaccttatgagatgagcgaaaatgccacaatttttctagtgtgagatatcacg 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2125 attggaaaaccttatgagatgagcgaaaatgccacaatttttctagtgtgagatatcacg 2184
Query: 406 tttttccatgaacaaacataaccagagaaacaatgaataggggtgaataaggagcaattg 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2185 tttttccatgaacaaacataaccagagaaacaatgaataggggtgaataaggagcaattg 2244
Query: 466 ggactggagcattcagggcatcttttaattgtttgagtacatgctggtgttggcagtgga 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2245 ggactggagcattcagggcatcttttaattgtttgagtacatgctggtgttggcagtgga 2304
Query: 526 tatttatcagaagaaaactgtatgatttaacgacttttttttttggatattacgtgctgt 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2305 tatttatcagaagaaaactgtatgatttaacgacttttttttttggatattacgtgctgt 2364
Query: 586 acttcaggacgatttctcaaattatgctaccttggccaccgacagaaggaggatgctcct 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2365 acttcaggacgatttctcaaattatgctaccttggccaccgacagaaggaggatgctcct 2424
Query: 646 cgtcagcgtaattgtatgatccggatcttcaatgcttgcaattaaaattgagctgtaaac 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2425 cgtcagcgtaattgtatgatccggatcttcaatgcttgcaattaaaattgagctgtaaac 2484
Query: 706 ccaatgactgtgttcttcataggttcaaatcttattcgcttcaagcatacaatagttttt 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2485 ccaatgactgtgttcttcataggttcaaatcttattcgcttcaagcatacaatagttttt 2544
Query: 766 atgtgaccattttaatgatactatcatgaggattataaaatttatataa-ttcattcaac 824
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 2545 atgtgaccattttaatgatactatcatgaggattataaaatttatataatttcattcaac 2604
Query: 825 ttatacgtattttattatactaatataggaatacttgttaatggtaaaactgtcaccttt 884
||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 2605 ttatacgtattttatcatactaatataggaatactgtttaatggtaaaactgtcaccttt 2664
Query: 885 t-agtattccactcca-ttattgtttgcagccagattc 920
| ||||| |||||||| |||||||||||||||||||||
Sbjct: 2665 taagtatcccactccagttattgtttgcagccagattc 2702
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8357
Number of Sequences: 1807
Number of extensions: 8357
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)