BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZD04FM1.SCF screened BAC_end
(907 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1790 1522 0.0
>3x_Contig1790
Length = 27369
Score = 1522 bits (768), Expect = 0.0
Identities = 806/816 (98%), Gaps = 2/816 (0%)
Strand = Plus / Plus
Query: 90 ccctgagttttcgagcagtttatcgtcatgtttaaacgtctcatcctatgaagagcttgt 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19926 ccctgagttttcgagcagtttatcgtcatgtttaaacgtctcatcctatgaagagcttgt 19985
Query: 150 caagaaaggtcttgctcaacatgcacttttactctggattgtcaaagctcacaatgctaa 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19986 caagaaaggtcttgctcaacatgcacttttactctggattgtcaaagctcacaatgctaa 20045
Query: 210 gttttataaaagtccccactcgccttcattcgttagcgatacctttaatgatgtcgagcg 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20046 gttttataaaagtccccactcgccttcattcgttagcgatacctttaatgatgtcgagcg 20105
Query: 270 caatatcacgatcgaaaaggacgatgtcttagaatacatgcaattttaccaagcgttttt 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20106 caatatcacgatcgaaaaggacgatgtcttagaatacatgcaattttaccaagcgttttt 20165
Query: 330 ccctaatctctcacagatgtttcctaaagtgtacagtgtaggaagttggtccataaagga 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20166 ccctaatctctcacagatgtttcctaaagtgtacagtgtaggaagttggtccataaagga 20225
Query: 390 cttcattatcgctggtgtggtgatggaccgtattgtatggttgagaatggcaagcaatga 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20226 cttcattatcgctggtgtggtgatggaccgtattgtatggttgagaatggcaagcaatga 20285
Query: 450 atatttcctattcgaaaagcaaacatttgatttcaaaagatcctattcctaacagcagta 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20286 atatttcctattcgaaaagcaaacatttgatttcaaaagatcctattcctaacagcagta 20345
Query: 510 agagtggcgtagtaccaatccaatacgctgaggcttttatgtcagtagcctggataccta 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20346 agagtggcgtagtaccaatccaatacgctgaggcttttatgtcagtagcctggataccta 20405
Query: 570 taccactgactaactaatgctcatcttcacttgatatatcgtcgaattcatttcattcag 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20406 taccactgactaactaatgctcatcttcacttgatatatcgtcgaattcatttcattcag 20465
Query: 630 ttacttggattagtcaagtgctgtcaagggccctttaatttactactggttcatttttca 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20466 ttacttggattagtcaagtgctgtcaagggccctttaatttactactggttcatttttca 20525
Query: 690 gaaagtccatccctcaattttgtccttctcacaacttcattgttcttcgtggtccgttta 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20526 gaaagtccatccctcaattttgtccttctcacaacttcattgttcttcgtggtccgttta 20585
Query: 750 taagcattgcatctttgaattctgcttaat-agagattttgtttggatttctttattaag 808
|||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct: 20586 taagcattgcatctttgaattctgcttaataagagattttgtttggattcttttattaag 20645
Query: 809 gcgcgaaaaactttccactagttagagaaccaccattaaactattacgaatatcaacatg 868
|||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||
Sbjct: 20646 gcgcgaaaaactttccactagttagagaacaaccataaaactataacgaatatcaacatg 20705
Query: 869 aggttaattagaagaaaagtggtattttcaatttta 904
|||||||| ||||||||||||| |||||||||||
Sbjct: 20706 aggttaatagaaagaaaagtggta-tttcaatttta 20740
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5768
Number of Sequences: 1807
Number of extensions: 5768
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 907
length of database: 10,358,551
effective HSP length: 16
effective length of query: 891
effective length of database: 10,329,639
effective search space: 9203708349
effective search space used: 9203708349
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)