BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZD04RM1.SCF screened BAC_end
(885 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1555 1053 0.0
>3x_Contig1555
Length = 10828
Score = 1053 bits (531), Expect = 0.0
Identities = 531/531 (100%)
Strand = Plus / Plus
Query: 349 aggagcaccatgtctaccaatctgacccagctacctggcctttgttattgcgtggtattt 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aggagcaccatgtctaccaatctgacccagctacctggcctttgttattgcgtggtattt 60
Query: 409 cttattggtcacaagatcacaagcaaatttatctattgggtaatgctgttgtgtggtggt 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cttattggtcacaagatcacaagcaaatttatctattgggtaatgctgttgtgtggtggt 120
Query: 469 cagttactgcgtttattggtgtcttcgttttggtgattgttgctgaactattggcttggc 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cagttactgcgtttattggtgtcttcgttttggtgattgttgctgaactattggcttggc 180
Query: 529 aattgggcaagtcaatcttgcaagataagcatgtcttgaatttccacatccaaactttcc 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aattgggcaagtcaatcttgcaagataagcatgtcttgaatttccacatccaaactttcc 240
Query: 589 aatatttgctaggttggggtcttcattatgcaccatccttcttgatgggtagacaattat 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aatatttgctaggttggggtcttcattatgcaccatccttcttgatgggtagacaattat 300
Query: 649 tcctacatcattatttgccagcttactacttcggtattctagcgtttgcccatgcactag 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tcctacatcattatttgccagcttactacttcggtattctagcgtttgcccatgcactag 360
Query: 709 agattattgtttcgtatgtcttcaaaaacaagaaaacagttggttacggagttgttatca 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 agattattgtttcgtatgtcttcaaaaacaagaaaacagttggttacggagttgttatca 420
Query: 769 cattccttgctgctgctactgctttcttctatgtgtacaagccattgatctatggtttgc 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 cattccttgctgctgctactgctttcttctatgtgtacaagccattgatctatggtttgc 480
Query: 829 catggactagagatgtgtgctataagagtcaaaaacttggtagcaactggg 879
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 catggactagagatgtgtgctataagagtcaaaaacttggtagcaactggg 531
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6744
Number of Sequences: 1807
Number of extensions: 6744
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 885
length of database: 10,358,551
effective HSP length: 16
effective length of query: 869
effective length of database: 10,329,639
effective search space: 8976456291
effective search space used: 8976456291
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)