BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC13ZD05FM1.SCF screened BAC_end
         (944 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1726                                                        1594   0.0  

>3x_Contig1726 
          Length = 20144

 Score = 1594 bits (804), Expect = 0.0
 Identities = 850/860 (98%), Gaps = 4/860 (0%)
 Strand = Plus / Plus

                                                                        
Query: 87   ttgcaatcgatattaccgaggataaactctcaactcgaaaaatctggtttacctgacatc 146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3532 ttgcaatcgatattaccgaggataaactctcaactcgaaaaatctggtttacctgacatc 3591

                                                                        
Query: 147  ttaggatccagcttccaatcaaatcgagttcccactctaacaaacgttatacgatccatt 206
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3592 ttaggatccagcttccaatcaaatcgagttcccactctaacaaacgttatacgatccatt 3651

                                                                        
Query: 207  ccaagggaatctattacgacagaaaggcttaccggagagctagcacatattgaagaaaag 266
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3652 ccaagggaatctatcacgacagaaaggcttaccggagagctagcacatattgaagaaaag 3711

                                                                        
Query: 267  cagggaagttctatgagcaccaattccgacatgagtcgcatacaaggtgaaatctttgaa 326
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3712 cagggaagttctatgagcaccaattccgacatgagtcgcatacaaggtgaaatctttgaa 3771

                                                                        
Query: 327  gagttaggtgagaacttgcattcttattatatccctaacgacgttagattggtacaaatc 386
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3772 gagttaggtgagaacttgcattcttattatatccctaacgacgttagattggtacaaatc 3831

                                                                        
Query: 387  atgaaactttgggtttggtgtgaaaaccaattgcatagttcggatgttggtgttccgagg 446
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3832 atgaaactttgggtttggtgtgaaaaccaattgcatagttcggatgttggtgttccgagg 3891

                                                                        
Query: 447  gttgaaggagtgatttagtgcaaaatctataatcttttatactatatatgcatgggttcc 506
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3892 gttgaaggagtgatttagtgcaaaatctataatcttttatactatatatgcatgggttcc 3951

                                                                        
Query: 507  ctatattcacattatgttttcaagcatttaacggcagcttgcaattttcacaccaaaaac 566
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3952 ctatattcacattatgttttcaagcatttaacggcagcttgcaattttcacaccaaaaac 4011

                                                                        
Query: 567  tcacagtctatagtgtcaccagtttccatctttaagaaacacaattgaatatcgtcgagg 626
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4012 tcacagtctatagtgtcaccagtttccatctttaagaaacacaattgaatatcgtcgagg 4071

                                                                        
Query: 627  ttttttggaagttcctcgctcatggtgttgtagatttttacatttttggtaatggtgaag 686
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4072 ttttttggaagttcctcgctcatggtgttgtagatttttacatttttggtaatggtgaag 4131

                                                                        
Query: 687  gttttgcttggctgtttgaactgatcataaaagtgaccatctttaaagaagtgataaagt 746
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4132 gttttgcttggctgtttgaactgatcataaaagtgaccatctttaaagaagtgataaagt 4191

                                                                        
Query: 747  tttgattttaatagccttaatgtacaaccaaactctggtcttttttcattttcgaattct 806
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4192 tttgattttaatagccttaatgtacaaccaaactctggtcttttttcattttcgaattct 4251

                                                                        
Query: 807  t-ttgtgagaattcaatgtggaatgtgattggattatcc-acagaagcttttt-gtatct 863
            | | ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 4252 tctggtgagaattcaatgtggaatgtgattggattatccaacagaagctttttggtatct 4311

                                                                        
Query: 864  tcgtcgataacttggcatcttacgtatatgtgagcgacatgcacaggttttggcaaaaaa 923
            |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||
Sbjct: 4312 tcgtcgataacttggcatctaacgtatatgtgagcgacatgcacagg-tttggcaaagaa 4370

                                
Query: 924  actttccctcgattcgaact 943
              ||||||||||||||||||
Sbjct: 4371 cttttccctcgattcgaact 4390


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7114
Number of Sequences: 1807
Number of extensions: 7114
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)