BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZD05RM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1748 1683 0.0
>3x_Contig1748
Length = 22566
Score = 1683 bits (849), Expect = 0.0
Identities = 883/891 (99%), Gaps = 3/891 (0%)
Strand = Plus / Minus
Query: 45 atattgaagctatgtagaagacttacgttgtactatcttgaagaacatttcaaacaaaac 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18373 atattgaagctatgtagaagacttacgttgtactatcttgaagaacatttcaaacaaaac 18314
Query: 105 ttcttaccttaactagtctggtggtttggaataaccagagttttttttcccggtcaatgc 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18313 ttcttaccttaactagtctggtggtttggaataaccagagttttttttcccggtcaatgc 18254
Query: 165 cgcctcataaacaaggtcagcacctgtccgtaatttcctgggtataccttgtctgatcaa 224
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 18253 cgcctcataaacaaggtcagcacctgtccgtaatttcctgggtataccttgcctgatcaa 18194
Query: 225 ccgagtatccacagtatgcatgaattgaaaactcttgatcgtctgaacacaataactaat 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18193 ccgagtatccacagtatgcatgaattgaaaactcttgatcgtctgaacacaataactaat 18134
Query: 285 agtattacttccgtgattgagttgaataagctcagaaatagccggcgaaatattgtagtt 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18133 agtattacttccgtgattgagttgaataagctcagaaatagccggcgaaatattgtagtt 18074
Query: 345 cttaggggagttctgaatgaactaattaagttcaaaagatatgtcgaagtcagttcagtt 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18073 cttaggggagttctgaatgaactaattaagttcaaaagatatgtcgaagtcagttcagtt 18014
Query: 405 aatgaagagcatttatccaaaaccagacttcttcaacattgagagtttcgaaggaaatta 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18013 aatgaagagcatttatccaaaaccagacttcttcaacattgagagtttcgaaggaaatta 17954
Query: 465 taatgagaaaaggtgctttacaaaatctacgtgtcttatgatatagcaaagaaaaaacat 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17953 taatgagaaaaggtgctttacaaaatctacgtgtcttatgatatagcaaagaaaaaacat 17894
Query: 525 ttccttgactatcgggtattaagtagaatatagtcagtaattgagatagatctcatgcat 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17893 ttccttgactatcgggtattaagtagaatatagtcagtaattgagatagatctcatgcat 17834
Query: 585 ttgtaaattaatgattctgatttcttaaccggtctttggttgttcgtctcgaggaccccg 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17833 ttgtaaattaatgattctgatttcttaaccggtctttggttgttcgtctcgaggaccccg 17774
Query: 645 ttaaacataagctgtaaatataacgtgggaaaaaagcacagttcgacggtcgcattgtcc 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17773 ttaaacataagctgtaaatataacgtgggaaaaaagcacagttcgacggtcgcattgtcc 17714
Query: 705 tggaagaat-acaatcagtaggttgcattggcgctaaaattatgaatgtttagattcagc 763
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17713 tggaagaataacaatcagtaggttgcattggcgctaaaattatgaatgtttagattcagc 17654
Query: 764 ttattgtaggtcgtaagcgtacttggatttttgccttagtcttctaccgtacttgtagaa 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17653 ttattgtaggtcgtaagcgtacttggatttttgccttagtcttctaccgtacttgtagaa 17594
Query: 824 taagaatgggacaggaatcannacagc-gcgaacaaacccaac-acaaaccagcccagtt 881
|||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||
Sbjct: 17593 taagaatgggacaggaatcaaacaagcggcgaacaaacccaacaacaaaccagcccagtt 17534
Query: 882 ggtacccatgttttcgaacatgaaaccagcaaacaatgggaatgcagcacc 932
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17533 ggtacccatgttttcgaacatgaaaccagcaaacaatgggaatgcagcacc 17483
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6599
Number of Sequences: 1807
Number of extensions: 6599
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)