BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZD07RM1.SCF screened BAC_end
(893 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1734 1515 0.0
>3x_Contig1734
Length = 17938
Score = 1515 bits (764), Expect = 0.0
Identities = 824/840 (98%), Gaps = 3/840 (0%)
Strand = Plus / Plus
Query: 51 ctttaactgattggataattctgtgaaagtttgtcgttttgtgtgttagtttgtgcgtac 110
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 5547 ctttaactgattggataattcagtgaaagtttgtcgttttgtgtgttagtttgtgcgtac 5606
Query: 111 gtgtctccttctgtcggcttctctcaacaagtcccgttgtctgaccagtatcacatattt 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5607 gtgtctccttctgtcggcttctctcaacaagtcccgttgtctgaccagtatcacatattt 5666
Query: 171 atagggtctttcttttgcatggattagtaacccatatcaggtaacccattctttttgcta 230
||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||
Sbjct: 5667 atagggtctttcttttgcatggattagtaacccatatcaggtaacccatacagctagcta 5726
Query: 231 tattcaataatggaaaacaaacatatctcgcacgtctctcagattgaaagacgtgctact 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5727 tattcaataatggaaaacaaacatatctcgcacgtctctcagattgaaagacgtgctact 5786
Query: 291 cctttgaacattcgtccagcttcgccttataccttaaatcctactgtggaaaaagacggt 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5787 cctttgaacattcgtccagcttcgccttataccttaaatcctactgtggaaaaagacggt 5846
Query: 351 ttatcatggcctagtattggtgctcgtgaaagagcagaggaaacggatgaagaagaacaa 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5847 ttatcatggcctagtattggtgctcgtgaaagagcagaggaaacggatgaagaagaacaa 5906
Query: 411 aaacgggttggtcgtattgcagatgcggttaagactattttgagtgagctcggtgaggat 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5907 aaacgggttggtcgtattgcagatgcggttaagactattttgagtgagctcggtgaggat 5966
Query: 471 accgaacgtgagggtttactggatacccctacacggtacgctaaagcgatgttgtatttc 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5967 accgaacgtgagggtttactggatacccctacacggtacgctaaagcgatgttgtatttc 6026
Query: 531 actaaaggctatcaggataatatcatgaacgatgtgattaagaatgctgtgttcgaggaa 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6027 actaaaggctatcaggataatatcatgaacgatgtgattaagaatgctgtgttcgaggaa 6086
Query: 591 gatcatgacgagatggttattgttcgtgacattgagatcttctctttgtgcgagcatcat 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6087 gatcatgacgagatggttattgttcgtgacattgagatcttctctttgtgcgagcatcat 6146
Query: 651 ttggtgccatttttcggtaaagttcatattggatacattcctaataagaaggtgttgggt 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6147 ttggtgccatttttcggtaaagttcatattggatacattcctaataagaaggtgttgggt 6206
Query: 711 ttatcgaaattggctcgtttagcagagatgtacgctagacgtttccaagtacaagaacgt 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6207 ttatcgaaattggctcgtttagcagagatgtacgctagacgtttccaagtacaagaacgt 6266
Query: 771 ttaacgaagcaaattgctatggcttctgagtgatatcttgaaaccttaga-gtgtcgctt 829
||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||
Sbjct: 6267 ttaacgaagcaaattgctatggctt-tgagtgatatcttgaaacc-tagaggtgtcgctg 6324
Query: 830 ggggcatcgaggctactcatatgtgtatggtgtctccgtgtgtccaaaaaactgtttctt 889
|| |||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct: 6325 tggtcatcgaggctactcatatgtgtatggtgtctcgtggtgtccaaaaaactggttctt 6384
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5858
Number of Sequences: 1807
Number of extensions: 5858
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 893
length of database: 10,358,551
effective HSP length: 16
effective length of query: 877
effective length of database: 10,329,639
effective search space: 9059093403
effective search space used: 9059093403
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)