BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZD08FM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1770 1596 0.0
>3x_Contig1770
Length = 29267
Score = 1596 bits (805), Expect = 0.0
Identities = 845/856 (98%), Gaps = 2/856 (0%)
Strand = Plus / Minus
Query: 85 atcaattattatagaaagacgggagaaacagacagctccagaccaaaattacccgttggt 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8035 atcaattattatagaaagacgggagaaacagacagctccagaccaaaattacccgttggt 7976
Query: 145 gagactcatgtattaggtgtgcaggataaatcaccattttggaattttggtttcgtcagt 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7975 gagactcatgtattaggtgtgcaggataaatcaccattttggaattttggtttcgtcagt 7916
Query: 205 ccaggaaacattgttcccactttatataacaatatggtcagagcccccgttttcaaacat 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7915 ccaggaaacattgttcccactttatataacaatatggtcagagcccccgttttcaaacat 7856
Query: 265 gaggtctctaagaccgatttccttctggtgaaaagtcttggtaatgggtccggtaacaga 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7855 gaggtctctaagaccgatttccttctggtgaaaagtcttggtaatgggtccggtaacaga 7796
Query: 325 ttctatttgcgtcaaattaatcatctctttgctgtcggtcaaacgttcccagtggtcgaa 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7795 ttctatttgcgtcaaattaatcatctctttgctgtcggtcaaacgttcccagtggtcgaa 7736
Query: 385 gttcctggtccgaattctagaaaggttactgctatgggtaagaaccgtttgaggatggtt 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7735 gttcctggtccgaattctagaaaggttactgctatgggtaagaaccgtttgaggatggtt 7676
Query: 445 gtgtatcgtattttgaacaaatctccggaaaacagactgttagtgaaacaggtggctcgt 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7675 gtgtatcgtattttgaacaaatctccggaaaacagactgttagtgaaacaggtggctcgt 7616
Query: 505 catttcccagaacaaaatgatatgcaaaacagacaaagattaaaggaattcatgaagtat 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7615 catttcccagaacaaaatgatatgcaaaacagacaaagattaaaggaattcatgaagtat 7556
Query: 565 caacgtgaaggtgatgatcaaggtttctggaaactaaaggagggagaagttttactggat 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7555 caacgtgaaggtgatgatcaaggtttctggaaactaaaggagggagaagttttactggat 7496
Query: 625 aacgaaaacgtgaagaaaatggttactcctgaagatgtttcactcgttgaatccatgtat 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7495 aacgaaaacgtgaagaaaatggttactcctgaagatgtttcactcgttgaatccatgtat 7436
Query: 685 tatggtcaacagttccaggaagatattgatttctacaacttcgatgaaagagctaaggag 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7435 tatggtcaacagttccaggaagatattgatttctacaacttcgatgaaagagctaaggag 7376
Query: 745 ttggaggagaacttaatattttggaatgctaccaagaatttcttgaatgctacacagatg 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7375 ttggaggagaacttaatattttggaatgctaccaagaatttcttgaatgctacacagatg 7316
Query: 805 agagcattgattcaaatacatggacctggtgatcctactgtttgtggtganagtttttcg 864
|||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 7315 agagcaatgattcaaatacatggacctggtgatcctactggttgtggtgaaggtttttcg 7256
Query: 865 tttttgaaaacct-tttgaaggggtgggttgtaaaatccggttcaaggga-caaccgcaa 922
||||||||||||| | ||||||| || |||||||||||||||||| ||| |||||||||
Sbjct: 7255 tttttgaaaacctctatgaagggtgggtttgtaaaatccggttcaaaggatcaaccgcaa 7196
Query: 923 attgctggtggtcata 938
||||||||||||||||
Sbjct: 7195 attgctggtggtcata 7180
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6537
Number of Sequences: 1807
Number of extensions: 6537
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)