BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZD10RM1.SCF screened BAC_end
(890 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1794 1628 0.0
>3x_Contig1794
Length = 36744
Score = 1628 bits (821), Expect = 0.0
Identities = 837/841 (99%), Gaps = 1/841 (0%)
Strand = Plus / Minus
Query: 51 aagataagagggagcattcttggttaaaggaacacgaaaaaaggaaaaagaaactgaaga 110
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29672 aagataagagggagcaagcttggttaaaggaacacgaaaaaaggaaaaagaaactgaaga 29613
Query: 111 aaagccattcataaacatgtcaatgtacgaattgaatatatcatttattcatctaatata 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29612 aaagccattcataaacatgtcaatgtacgaattgaatatatcatttattcatctaatata 29553
Query: 171 caattaattaatgcattagttgaaatcatagatccaaatgaaatcaactttttgaagttt 230
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 29552 caattaattaatgcattagttgaaatcatagatccaaatgaaatcaacattttgaagttt 29493
Query: 231 gtgtactattataaaattgctttacaatatcaactctataaatccataacatactgcaaa 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29492 gtgtactattataaaattgctttacaatatcaactctataaatccataacatactgcaaa 29433
Query: 291 gattatgataatgaagatcacaacaccagtaatataatgccaagtaggtgcaaacgtgaa 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29432 gattatgataatgaagatcacaacaccagtaatataatgccaagtaggtgcaaacgtgaa 29373
Query: 351 tcttgaaaacattaataacaaagaccatgcaccgagaattaaggatatggataatgatat 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29372 tcttgaaaacattaataacaaagaccatgcaccgagaattaaggatatggataatgatat 29313
Query: 411 gaatatcatcgtcaaaatagaagtttcgttttctagttgtgtatcatcgttgagtgattt 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29312 gaatatcatcgtcaaaatagaagtttcgttttctagttgtgtatcatcgttgagtgattt 29253
Query: 471 gaacaaagatgtcatgataccaatggttacgcctgtagtcaaacaggatattagcaatga 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29252 gaacaaagatgtcatgataccaatggttacgcctgtagtcaaacaggatattagcaatga 29193
Query: 531 agaaacatagaagaaagatatcacctggtcatgctcgaactcatatattgattctgaatt 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29192 agaaacatagaagaaagatatcacctggtcatgctcgaactcatatattgattctgaatt 29133
Query: 591 ttgttcttcgagttcccaaaacttattcacgtcgtttctttccgaagaagaagaagtaag 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29132 ttgttcttcgagttcccaaaacttattcacgtcgtttctttccgaagaagaagaagtaag 29073
Query: 651 tatggaagtgtcagtgtctattgagttgtaggacttacctgcatctcttaataaagattt 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29072 tatggaagtgtcagtgtctattgagttgtaggacttacctgcatctcttaataaagattt 29013
Query: 711 cctagcttggacgtcgtcaattataccgaatgcaatttggaacttcgataagagatgata 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29012 cctagcttggacgtcgtcaattataccgaatgcaatttggaacttcgataagagatgata 28953
Query: 771 gatggcaattatgaatgatgggttaaatctgatgagaccagtatcgtgtgtgtattcgtc 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28952 gatggcaattatgaatgatgggttaaatctgatgagaccagtatcgtgtgtgtattcgtc 28893
Query: 831 atcgtcttcgtcaagacaggaat-aaagtcctgatccattgcctcttctccgtcatcaaa 889
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 28892 atcgtcttcgtcaagacaggaataaaagtcctgatccattgcctcttctccgtcatcaaa 28833
Query: 890 t 890
|
Sbjct: 28832 t 28832
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9188
Number of Sequences: 1807
Number of extensions: 9188
Number of successful extensions: 70
Number of sequences better than 1.0e-20: 1
length of query: 890
length of database: 10,358,551
effective HSP length: 16
effective length of query: 874
effective length of database: 10,329,639
effective search space: 9028104486
effective search space used: 9028104486
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)