BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZD11FM1.SCF screened BAC_end
(943 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1584 1592 0.0
>3x_Contig1584
Length = 9710
Score = 1592 bits (803), Expect = 0.0
Identities = 848/858 (98%), Gaps = 4/858 (0%)
Strand = Plus / Plus
Query: 88 ccatcacatttatcatcgaatctagcattgctccagcaactgacgcaatctcctcagaga 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2758 ccatcacatttatcatcgaatctagcattgctccagcaactgacgcaatctcctcagaga 2817
Query: 148 cccagcaccaagttgccttccaataatggagctgctagcattccaggcggtttcaatcta 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2818 cccagcaccaagttgccttccaataatggagctgctagcattccaggcggtttcaatcta 2877
Query: 208 aaacaactgggtactttcccaacagcgggaatcggcggggttacatacgatttccaagaa 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2878 aaacaactgggtactttcccaacagcgggaatcggcggggttacatacgatttccaagaa 2937
Query: 268 ctactgggactgaaatcgcctccaaatacttccactaccgagacagtaccaacagtttct 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2938 ctactgggactgaaatcgcctccaaatacttccactaccgagacagtaccaacagtttct 2997
Query: 328 cacgataacgatcctctaaaacaggaatctgccgctgaagtgttagccagtcttcagatg 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2998 cacgataacgatcctctaaaacaggaatctgccgctgaagtgttagccagtcttcagatg 3057
Query: 388 aaacaacaacaaaagacgtcgaatcctttagacagcaataacttggatattggtacccca 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3058 aaacaacaacaaaagacgtcgaatcctttagacagcaataacttggatattggtacccca 3117
Query: 448 agcttacccaataacccaactatatctccggctgctccaatgtccccgttgacaaaactg 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3118 agcttacccaataacccaactatatctccggctgctccaatgtccccgttgacaaaactg 3177
Query: 508 gatgattctcaggcaagaggtaatgcggactccaagtcagtaggtcctaacggtggtatt 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3178 gatgattctcaggcaagaggtaatgcggactccaagtcagtaggtcctaacggtggtatt 3237
Query: 568 gtaaacagcaatgccacaagcatgtccaaatcaaatacacaagaatctcaggcctcaagt 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3238 gtaaacagcaatgccacaagcatgtccaaatcaaatacacaagaatctcaggcctcaagt 3297
Query: 628 gatacggaactgtcacgtatcggtaccattgccagtatgatagatttttctacaaacaca 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3298 gatacggaactgtcacgtatcggtaccattgccagtatgatagatttttctacaaacaca 3357
Query: 688 aatttgaatctaatcgatttgaaattgtttcaccattattgcacaaacgtttggccgacc 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3358 aatttgaatctaatcgatttgaaattgtttcaccattattgcacaaacgtttggccgacc 3417
Query: 748 ataactgctgctggaatcagtgagaagaaaatatggtccgtcgacgtgcctgagaatagc 807
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 3418 ataactgctgctggaatcagtgagaagaaaatatggtccgtcgacgtgcctgag-atagc 3476
Query: 808 g-ttgaatacccatttttaatgcatgccttgntagcgtttagcgcaactcatttttctcg 866
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 3477 gtttgaatacccatttttaatgcatgccttgttagcgtttagcgcaactcatttttctcg 3536
Query: 867 taccgagagtgttttggaaagat-tgtaacacagcattagtttggagcacttcgattatt 925
||||||||||| ||||||||||| ||||||||||||| ||| | |||||||||||||||
Sbjct: 3537 taccgagagtggtttggaaagatatgtaacacagcataggttggaagcacttcgattatt 3596
Query: 926 ga-agaagcagtacttga 942
|| |||||||||||||||
Sbjct: 3597 gagagaagcagtacttga 3614
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5929
Number of Sequences: 1807
Number of extensions: 5929
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 943
length of database: 10,358,551
effective HSP length: 16
effective length of query: 927
effective length of database: 10,329,639
effective search space: 9575575353
effective search space used: 9575575353
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)