BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZD11RM1.SCF screened BAC_end
(945 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1766 1614 0.0
>3x_Contig1766
Length = 23951
Score = 1614 bits (814), Expect = 0.0
Identities = 875/892 (98%), Gaps = 3/892 (0%)
Strand = Plus / Minus
Query: 42 gctttcagtttgaacttgaaacggtagacattgagtattctattgtcacatttatataaa 101
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 12436 gctttcagtttgaacttgaaacggaggacattgagtattctattgtcacatttatataaa 12377
Query: 102 ctcgccaacgcagacgaaaaccatgaggtttcatggctgagcattactgaagatctcatc 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12376 ctcgccaacgcagacgaaaaccatgaggtttcatggctgagcattactgaagatctcatc 12317
Query: 162 gtgggaacgtttagactggtgtgtggaccgaattgtttcttgttgaaacattcncttatc 221
|||||||||||||||||||||||||||||||||||||||||||||||||| || | || |
Sbjct: 12316 gtgggaacgtttagactggtgtgtggaccgaattgtttcttgttgaaacaatctcgtaac 12257
Query: 222 cgtatggtaacaagaacaaagaaattttgaaaccaatagaaacgattagcgctcttaaaa 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12256 cgtatggtaacaagaacaaagaaattttgaaaccaatagaaacgattagcgctcttaaaa 12197
Query: 282 aggaacgactacgaaaaaacttactgcatcaattcgctctctcaaaccataagtgttttc 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12196 aggaacgactacgaaaaaacttactgcatcaattcgctctctcaaaccataagtgttttc 12137
Query: 342 gtggagaaacctacttagtattattgagaaggagaatttgcaacaccagcgagagagcta 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12136 gtggagaaacctacttagtattattgagaaggagaatttgcaacaccagcgagagagcta 12077
Query: 402 taatgtctggcttaaggtggaaagattccttaggatatttccggaattggtaagagcttc 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12076 taatgtctggcttaaggtggaaagattccttaggatatttccggaattggtaagagcttc 12017
Query: 462 ggaatttgaaagctgtgcgataaccatatctggaaaagttagtactaagtgaaatctttc 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12016 ggaatttgaaagctgtgcgataaccatatctggaaaagttagtactaagtgaaatctttc 11957
Query: 522 catgttccattcttcgaaatagcgttctagctgtacaaatacggaatgaggttgtgctta 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11956 catgttccattcttcgaaatagcgttctagctgtacaaatacggaatgaggttgtgctta 11897
Query: 582 tgaaagaaattccgatgagccacgtcttgtgcaagggcctgtctaagaaagtttactgag 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11896 tgaaagaaattccgatgagccacgtcttgtgcaagggcctgtctaagaaagtttactgag 11837
Query: 642 tatacttactcgataaggaaagctatgaagaacaatgctaaaagacatttcctggtctac 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11836 tatacttactcgataaggaaagctatgaagaacaatgctaaaagacatttcctggtctac 11777
Query: 702 agcaacggctgagagcactcaaaaatatccacagcgatagcccggatttaaccatgctgn 761
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11776 agcaacggctgagagcactcaaaaatatccacagcgatagcccggatttaaccatgctgt 11717
Query: 762 taatggtaattatcttcgctgacgggtatctaaaaggaaagcttcgaaatgtctttgtct 821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11716 taatggtaattatcttcgctgacgggtatctaaaaggaaagcttcgaaatgtctttgtct 11657
Query: 822 taagatgcgaaaaaaaaaggaaaggtccacaggttttctaacttaaaagaaaaatgattc 881
|||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct: 11656 aaagatgcgaaaaaaaaaggaaaggtccacagg-tttctaactaaaaagaaaaatgattc 11598
Query: 882 atgatgaaggcgac-atacaagaagttatggacgggtagttaaaactaacac 932
|||||||| ||||| ||||||||||| |||||||| || |||||||||||
Sbjct: 11597 atgatgaa-gcgacaatacaagaagtaatggacggtaggtaaaaactaacac 11547
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7218
Number of Sequences: 1807
Number of extensions: 7218
Number of successful extensions: 63
Number of sequences better than 1.0e-20: 1
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)