BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZD12FM1.SCF screened BAC_end
(970 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1629 1314 0.0
>3x_Contig1629
Length = 12481
Score = 1314 bits (663), Expect = 0.0
Identities = 758/783 (96%), Gaps = 5/783 (0%)
Strand = Plus / Minus
Query: 85 gactatttaaaaaacatgaaaaaatcaagtgaaaaatttttaatagttcttcatctcatc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10492 gactatttaaaaaacatgaaaaaatcaagtgaaaaatttttaatagttcttcatctcatc 10433
Query: 145 atatgtaaagttgaaagtgtttaatggtatctactttgtttatttcccttccccatcgca 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10432 atatgtaaagttgaaagtgtttaatggtatctactttgtttatttcccttccccatcgca 10373
Query: 205 aaactctagaactttttccacagctctagctagttaatattaatacacaatgtctcacag 264
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10372 aaactctagaacggtaaccacagctctagctagttaatattaatacacaatgtctcacag 10313
Query: 265 aaagtacgaagctccacgtcacggtcatttaggtttcttgccaagaaagagagctgcctc 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10312 aaagtacgaagctccacgtcacggtcatttaggtttcttgccaagaaagagagctgcctc 10253
Query: 325 tgttagaggtagagttaagtctttcccaaaggacgaccaaactaagccagttgctttgac 384
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 10252 tgttagaggtagagttaagtctttcccaaaggacgaccaaactaaggcagttgctttgac 10193
Query: 385 ctctttcttgggttacaaggctggtatgtccactatcgttagagacttggacagaccagg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10192 ctctttcttgggttacaaggctggtatgtccactatcgttagagacttggacagaccagg 10133
Query: 445 ttccaagttccacaagcgtgaagttgttgaagctgttaccgttgttgacaccccaccaat 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10132 ttccaagttccacaagcgtgaagttgttgaagctgttaccgttgttgacaccccaccaat 10073
Query: 505 cgttgttgtcggtgttgttggttacgttgaaaccccaagaggtttgagatccttgaccac 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10072 cgttgttgtcggtgttgttggttacgttgaaaccccaagaggtttgagatccttgaccac 10013
Query: 565 cgtctgggctgaacatttgtccgacgaagtcaagagaagattctacaagaactggtacaa 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10012 cgtctgggctgaacatttgtccgacgaagtcaagagaagattctacaagaactggtacaa 9953
Query: 625 gtccaagaagaaggctttcaccaagtactctgctaagtacgctgaaaacggtgcccaagt 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9952 gtccaagaagaaggctttcaccaagtactctgctaagtacgctgaaaacggtgcccaagt 9893
Query: 685 cgacagataattggccagaatcaagaagtacgcttctgtttgtagagtctttgtccacac 744
||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 9892 cgacagagaattggccagaatcaagaagtacgcttctgttgttagagtcttggtccacac 9833
Query: 745 ccaagtcagaatgacttcattgtct-aaaagaaagctcatttggcttgaattccaattga 803
||||||||||| |||| |||||||| ||||||| ||||||||||| |||| |||||||||
Sbjct: 9832 ccaagtcagaaagactccattgtctcaaaagaaggctcatttggc-tgaaatccaattga 9774
Query: 804 accgttggttctttctctgacaaagtttgactgggcttaatgaacacttttaaaagaacg 863
| || ||||||| |||||||| ||| |||||||||| ||| |||||||| |||||| ||
Sbjct: 9773 a-cggtggttctgtctctgac-aaggttgactgggc-taaggaacacttcgaaaagaccg 9717
Query: 864 ttg 866
|||
Sbjct: 9716 ttg 9714
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8095
Number of Sequences: 1807
Number of extensions: 8095
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 970
length of database: 10,358,551
effective HSP length: 16
effective length of query: 954
effective length of database: 10,329,639
effective search space: 9854475606
effective search space used: 9854475606
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)