BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZD12RM1.SCF screened BAC_end
(955 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1400 1548 0.0
>3x_Contig1400
Length = 8536
Score = 1548 bits (781), Expect = 0.0
Identities = 872/897 (97%), Gaps = 5/897 (0%)
Strand = Plus / Minus
Query: 46 gcttgntaccaacgaagatctacattcagcngaancnaaaaagactgatacgactgagcc 105
||||| |||||||||||||||||| |||| ||| | ||||||||||||| |||||||||
Sbjct: 8372 gcttgttaccaacgaagatctacaaacagctgaatctaaaaagactgataagactgagcc 8313
Query: 106 ttccaagccctctgaagagataaatctagagggtgttgcgaaacctgatcctaaaccatc 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8312 ttccaagccctctgaagagataaatctagagggtgttgcgaaacctgatcctaaaccatc 8253
Query: 166 atctacatttaaaaaaaggaaaacaaaatcaagaagagcttaagctggtgattaact-tt 224
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 8252 atctacacctaaaaaaaggaaaacaaaatcaagaagagcttaagctggtgataaaccatt 8193
Query: 225 ctttcacctgagcaactttctgattagactacattggacagtaagtaaaatcatttttaa 284
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8192 ctctcacctgagcaactttctgattagactacattggacagtaagtaaaatcatttttaa 8133
Query: 285 acgcaataaccactgcatagacttgtaacatttgggaaccatataaaatttaattcaaat 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8132 acgcaataaccactgcatagacttgtaacatttgggaaccatataaaatttaattcaaat 8073
Query: 345 acaaaggttgcagaagccattatttcgtcagattactacgatctattatatacaacgttg 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8072 acaaaggttgcagaagccattatttcgtcagattactacgatctattatatacaacgttg 8013
Query: 405 tgtaaaggcacatcctaaatagctgccttccgtttcctttttcactcttcgttattgttt 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8012 tgtaaaggcacatcctaaatagctgccttccgtttcctttttcactcttcgttattgttt 7953
Query: 465 catgcataatccatacatttcatgttcgctcggaacttctatggcattcagatttcgttt 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7952 catgcataatccatacatttcatgttcgctcggaacttctatggcattcagatttcgttt 7893
Query: 525 tgagaaaaaaaaaaaaatatgaacggaaagtaaatgaatcttaggtctgttcaaacaatt 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7892 tgagaaaaaaaaaaaaatatgaacggaaagtaaatgaatcttaggtctgttcaaacaatt 7833
Query: 585 taggaatcagtttgagttttggacttagtcactattaataggttgtatttccttttatct 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7832 taggaatcagtttgagttttggacttagtcactattaataggttgtatttccttttatct 7773
Query: 645 attctctttctagtacagtcatttagcctaggttctggcagaatttataatccagaggaa 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7772 attctctttctagtacagtcatttagcctaggttctggcagaatttataatccagaggaa 7713
Query: 705 ccaatccacagtacgagtgtaattgacttattccctaccgattttggaacgcttctttgg 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7712 ccaatccacagtacgagtgtaattgacttattccctaccgattttggaacgcttctttgg 7653
Query: 765 tacatcaggacttttgattacaacttagaggtaaagccttagattgtttgtttgtcattg 824
|||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 7652 tacatcaggacttttgataacaacttagaggtaagtccttagattgtttgtttgtcattg 7593
Query: 825 ttaaaggaacttttctatacgtaagtgcagcttcattttac-actagccatctttttcgt 883
||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
Sbjct: 7592 ttaaaggaacttttctatacgtaagtgcagc-tcattttacaactagccatcttttcgtt 7534
Query: 884 tcttgtaggttgggctttatttctaacctttttctgatccgtgaaatatggatgccg 940
|||||||||||| ||||||||||||||| ||||||||| |||| |||||||||||||
Sbjct: 7533 tcttgtaggttgtgctttatttctaacc-ttttctgat-cgtggaatatggatgccg 7479
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,728
Number of Sequences: 1807
Number of extensions: 14728
Number of successful extensions: 224
Number of sequences better than 1.0e-20: 1
length of query: 955
length of database: 10,358,551
effective HSP length: 16
effective length of query: 939
effective length of database: 10,329,639
effective search space: 9699531021
effective search space used: 9699531021
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)