BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZE01RM1.SCF screened BAC_end
(913 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1720 1582 0.0
>3x_Contig1720
Length = 19870
Score = 1582 bits (798), Expect = 0.0
Identities = 860/875 (98%), Gaps = 5/875 (0%)
Strand = Plus / Minus
Query: 41 gcttcttacatttggactctgcatatccgatattagaattcgaatacgtacacaacttat 100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9490 gcttcttacatttggactctgcatatccgatattagaattcgaatacgtacacaacttat 9431
Query: 101 tctcctttaaacatcggctacacggtctttcaccatcacatttggtttttgatttcctac 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9430 tctcctttaaacatcggctacacggtctttcaccatcacatttggtttttgatttcctac 9371
Query: 161 aagcatcacatgcttttgatacccttctctttatggttggtaattcggcatatctgctag 220
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||
Sbjct: 9370 aagcatcacatgcttttgatacccttctctttatggttggtaattcggcagagctgcgag 9311
Query: 221 aaccattgaccattataaagtgatgcgatgcaaatgaatatgtgttgtatacacggaaag 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9310 aaccattgaccattataaagtgatgcgatgcaaatgaatatgtgttgtatacacggaaag 9251
Query: 281 gtgaagaaaaacaaaagctgatccagagaaaaaaaatatttaggatatgatatgaaagac 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9250 gtgaagaaaaacaaaagctgatccagagaaaaaaaatatttaggatatgatatgaaagac 9191
Query: 341 tgatgattccaaacaagtcctgagtatttccgcgaattagtagtttcaaaaaagataaca 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9190 tgatgattccaaacaagtcctgagtatttccgcgaattagtagtttcaaaaaagataaca 9131
Query: 401 accgcttgaatttggttcacttttcttaatcgttgtccttcttctacttcttcctctgct 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9130 accgcttgaatttggttcacttttcttaatcgttgtccttcttctacttcttcctctgct 9071
Query: 461 ttatctgataagttcgtagggccccaatttaactccagtcttcgatgaagaagacaggga 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9070 ttatctgataagttcgtagggccccaatttaactccagtcttcgatgaagaagacaggga 9011
Query: 521 tgttatatttgactaaatatctcctctttatttccgagttcctaaacagaaagactcaat 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9010 tgttatatttgactaaatatctcctctttatttccgagttcctaaacagaaagactcaat 8951
Query: 581 tataaacggattagtcgatccaagtccatttgataatcaatggattcgccttcaaagagc 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8950 tataaacggattagtcgatccaagtccatttgataatcaatggattcgccttcaaagagc 8891
Query: 641 aataataaaatcaaataaacctagtgtaatcagtggtgcaggtggctactacagattaca 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8890 aataataaaatcaaataaacctagtgtaatcagtggtgcaggtggctactacagattaca 8831
Query: 701 atatctncaagcactagcctctccgtaaaatatgaatatttctcacgcaggcaaaactgt 760
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8830 atatctccaagcactagcctctccgtaaaatatgaatatttctcacgcaggcaaaactgt 8771
Query: 761 atttgattatctggcanaaagttccctattctgccgttggacctttaatttttcactttg 820
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8770 atttgattatctggcaaaaagttccctattctgccgttggacctttaatttttcactttg 8711
Query: 821 tttctcagcta-cttaatacgccttgtgctgnt-aagtttaggtctatatcgatga-tat 877
||||||||||| || ||||||| |||||||| | ||||| |||||||||||||||| |||
Sbjct: 8710 tttctcagctacctcaatacgctttgtgctgttaaagttaaggtctatatcgatgattat 8651
Query: 878 gtgcaaccg-aatgctattgagagt-gaaagaacc 910
||||||||| ||||||| ||||||| |||||||||
Sbjct: 8650 gtgcaaccgaaatgctagtgagagtagaaagaacc 8616
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7667
Number of Sequences: 1807
Number of extensions: 7667
Number of successful extensions: 67
Number of sequences better than 1.0e-20: 1
length of query: 913
length of database: 10,358,551
effective HSP length: 16
effective length of query: 897
effective length of database: 10,329,639
effective search space: 9265686183
effective search space used: 9265686183
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)