BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZE02FM1.SCF screened BAC_end
(946 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1571 1513 0.0
>3x_Contig1571
Length = 13536
Score = 1513 bits (763), Expect = 0.0
Identities = 807/815 (99%), Gaps = 5/815 (0%)
Strand = Plus / Plus
Query: 89 gtggaaagagagcgagggattacaatcaaagcacagacatgctccatgttttaccaggat 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 gtggaaagagagcgagggattacaatcaaagcacagacatgctccatgttttaccaggat 704
Query: 149 cctagaacgaaattggactatctcttacatttagtggatacaccgggccatgtggatttt 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 cctagaacgaaattggactatctcttacatttagtggatacaccgggccatgtggatttt 764
Query: 209 cgtgctgaagtttcaagatcgtatgcatcgtgtggtggcgctttgttactcgttgacgct 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 cgtgctgaagtttcaagatcgtatgcatcgtgtggtggcgctttgttactcgttgacgct 824
Query: 269 tcccaaggtgttcaagcacagacagtcgcaaacttttacctcgcttatagtatggatttg 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 tcccaaggtgttcaagcacagacagtcgcaaacttttacctcgcttatagtatggatttg 884
Query: 329 aaacttattcctgtcataaacaagattgacttggacattgctgacattgaccaagcagaa 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 885 aaacttattcctgtcataaacaagattgacttggacattgctgacattgaccaagcagaa 944
Query: 389 gaacaggttgaaaatatgttcgagctacctaagtcagattgtatcaaagttagtgctaaa 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 945 gaacaggttgaaaatatgttcgagctacctaagtcagattgtatcaaagttagtgctaaa 1004
Query: 449 actggattgcacgtcgagcaattgttacccgctattgttgatagaatacctcctccgacc 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1005 actggattgcacgtcgagcaattgttacccgctattgttgatagaatacctcctccgacc 1064
Query: 509 ggtaaagttgagaaaccattacgtgcattattggtggattcgtggtatgactcttattta 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1065 ggtaaagttgagaaaccattacgtgcattattggtggattcgtggtatgactcttattta 1124
Query: 569 ggagtggtgcttcttgtacatatagttgatggtcaagtgaaaagaggagataaaatcatc 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1125 ggagtggtgcttcttgtacatatagttgatggtcaagtgaaaagaggagataaaatcatc 1184
Query: 629 actgccgcaaatggattgaagtatgaagtgagggaatgcggtataatgtacccagatcgt 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1185 actgccgcaaatggattgaagtatgaagtgagggaatgcggtataatgtacccagatcgt 1244
Query: 689 gtcgctactaacacactgaaatcaggtcaagtcgggtatttggtacctggcatgaaagaa 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1245 gtcgctactaacacactgaaatcaggtcaagtcgggtatttggtacctggcatgaaagaa 1304
Query: 749 tctaaggatgccaagattggtgatactttgatgcatctcggtaaagaatcgattcctgaa 808
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1305 tctaaggatgccaagattggtgatactttgatgcatctcggtaaagaatcgattactgaa 1364
Query: 809 gtgttaccaggaatttgaaggaccaaaaccccatggttcttcgtagggagctttccctgc 868
||||||||||| |||||||| ||||||| ||||||| |||||||| ||||||||||||||
Sbjct: 1365 gtgttaccagg-atttgaagaaccaaaa-cccatgg-tcttcgta-ggagctttccctgc 1420
Query: 869 ttgatggggccgaattcaaagcgtttgacgatgat 903
|||||||||||||||||||||||| |||||||||
Sbjct: 1421 -tgatggggccgaattcaaagcgttagacgatgat 1454
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5235
Number of Sequences: 1807
Number of extensions: 5235
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)