BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC13ZE02RM1.SCF screened BAC_end
         (935 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1390                                                        1665   0.0  
3x_Contig1623                                                         123   7e-28
3x_Contig1718                                                         117   4e-26
3x_Contig1762                                                         115   2e-25
3x_Contig1487                                                         115   2e-25
3x_Contig17                                                           111   3e-24

>3x_Contig1390 
          Length = 7609

 Score = 1665 bits (840), Expect = 0.0
 Identities = 880/888 (99%), Gaps = 4/888 (0%)
 Strand = Plus / Plus

                                                                        
Query: 49   cgataaacgaagtttaactactgcaagcatgcgagaggccctgggttcaattcccagctc 108
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5499 cgataaacgaagtttaactactgcaagcatgcgagaggccctgggttcaattcccagctc 5558

                                                                        
Query: 109  gccccaattaatttttcccaatttatttcccggtatatccgggtaatcgtactacattca 168
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5559 gccccaattaatttttcccaatttatttcccggtatatccgggtaatcgtactacattca 5618

                                                                        
Query: 169  taattcaaccttctttttccactttaattcatatttacgatgaataagaatattaattga 228
            |||||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||
Sbjct: 5619 taattcaaccttctttttccactttaattcatatttacgatgaataagaagaagaattga 5678

                                                                        
Query: 229  gcctgaacatcaatatcaaacccaaatgcgcagaccgatcagatctgaagcccaagctca 288
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5679 gcctgaacatcaatatcaaacccaaatgcgcagaccgatcagatctgaagcccaagctca 5738

                                                                        
Query: 289  tcgcgagtgccataaacaacagaaaataccaattctcaaaatttatcacactaatgtcac 348
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5739 tcgcgagtgccataaacaacagaaaataccaattctcaaaatttatcacactaatgtcac 5798

                                                                        
Query: 349  aacaagcgagtaccgaactcacgatcgaagagggagagctaccgacaaggtttgagattg 408
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5799 aacaagcgagtaccgaactcacgatcgaagagggagagctaccgacaaggtttgagattg 5858

                                                                        
Query: 409  aattagaatttgttcaatctttggcaaacataccatacgtcacatatctactgacacaat 468
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5859 aattagaatttgttcaatctttggcaaacataccatacgtcacatatctactgacacaat 5918

                                                                        
Query: 469  tgcagctttggcaagacccaaagtttaaaagatacttgaaataccttgagtactggcatg 528
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5919 tgcagctttggcaagacccaaagtttaaaagatacttgaaataccttgagtactggcatg 5978

                                                                        
Query: 529  agccggaatatgcccaatgcattgtgtatccaaattctctattcgttttgaaacttttga 588
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5979 agccggaatatgcccaatgcattgtgtatccaaattctctattcgttttgaaacttttga 6038

                                                                        
Query: 589  ataccctatttgaaggatctacagtgaacgagaacggtgtgcttgaaggatgtgaacacg 648
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6039 ataccctatttgaaggatctacagtgaacgagaacggtgtgcttgaaggatgtgaacacg 6098

                                                                        
Query: 649  tacctcgtattcttcaaactcagggtacccaatggatgaatgagatggtggagaggtgga 708
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6099 tacctcgtattcttcaaactcagggtacccaatggatgaatgagatggtggagaggtgga 6158

                                                                        
Query: 709  gagagtaatatgactggatcgcatttacccttaagtttccacctgtacaatgcgattgtc 768
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6159 gagagtaatatgactggatcgcatttacccttaagtttccacctgtacaatgcgattgtc 6218

                                                                        
Query: 769  tcaatatctatggaaaactgtatcacattggaataatctctgatcggctcacaaatagga 828
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6219 tcaatatctatggaaaactgtatcacattggaataatctctgatcggctcacaaatagga 6278

                                                                        
Query: 829  aagttcagacctgtatcaagaaaccctgac-actattggtattgggtgttttcaagtttg 887
            |||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||
Sbjct: 6279 aagttcagacctgtatcaag-aaccctgacaactattggtatt-ggtgttttcaagtttg 6336

                                                            
Query: 888  tccgattttcaacacaactcaatcaaatgatgtaatttcaattcaggg 935
            | ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 6337 t-cgattttcaacacaactcaatcagatgatgtaatttcaattcaggg 6383


>3x_Contig1623 
          Length = 14379

 Score =  123 bits (62), Expect = 7e-28
 Identities = 69/70 (98%), Gaps = 1/70 (1%)
 Strand = Plus / Minus

                                                                        
Query: 49   cgataaacgaagtttaactactgcaa-gcatgcgagaggccctgggttcaattcccagct 107
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 7072 cgataaacgaagtttaactactgcaaagcatgcgagaggccctgggttcaattcccagct 7013

                      
Query: 108  cgccccaatt 117
            ||||||||||
Sbjct: 7012 cgccccaatt 7003


>3x_Contig1718 
          Length = 19496

 Score =  117 bits (59), Expect = 4e-26
 Identities = 66/67 (98%), Gaps = 1/67 (1%)
 Strand = Plus / Plus

                                                                        
Query: 49   cgataaacgaagtttaactactgcaa-gcatgcgagaggccctgggttcaattcccagct 107
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 4962 cgataaacgaagtttaactactgcaaagcatgcgagaggccctgggttcaattcccagct 5021

                   
Query: 108  cgcccca 114
            |||||||
Sbjct: 5022 cgcccca 5028


>3x_Contig1762 
          Length = 22098

 Score =  115 bits (58), Expect = 2e-25
 Identities = 68/70 (97%), Gaps = 1/70 (1%)
 Strand = Plus / Plus

                                                                        
Query: 49   cgataaacgaagtttaactactgcaa-gcatgcgagaggccctgggttcaattcccagct 107
            ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 6166 cgataaacggagtttaactactgcaaagcatgcgagaggccctgggttcaattcccagct 6225

                      
Query: 108  cgccccaatt 117
            ||||||||||
Sbjct: 6226 cgccccaatt 6235


>3x_Contig1487 
          Length = 9002

 Score =  115 bits (58), Expect = 2e-25
 Identities = 65/66 (98%), Gaps = 1/66 (1%)
 Strand = Plus / Minus

                                                                        
Query: 49   cgataaacgaagtttaactactgcaa-gcatgcgagaggccctgggttcaattcccagct 107
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 5396 cgataaacgaagtttaactactgcaaagcatgcgagaggccctgggttcaattcccagct 5337

                  
Query: 108  cgcccc 113
            ||||||
Sbjct: 5336 cgcccc 5331


>3x_Contig17 
          Length = 819

 Score =  111 bits (56), Expect = 3e-24
 Identities = 66/68 (97%), Gaps = 1/68 (1%)
 Strand = Plus / Minus

                                                                       
Query: 49  cgataaacgaagtttaactactgcaa-gcatgcgagaggccctgggttcaattcccagct 107
           |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 202 cgataaacgaggtttaactactgcaaagcatgcgagaggccctgggttcaattcccagct 143

                   
Query: 108 cgccccaa 115
           ||||||||
Sbjct: 142 cgccccaa 135


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7040
Number of Sequences: 1807
Number of extensions: 7040
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 6
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)