BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC13ZE02RM1.SCF screened BAC_end (935 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1390 1665 0.0 3x_Contig1623 123 7e-28 3x_Contig1718 117 4e-26 3x_Contig1762 115 2e-25 3x_Contig1487 115 2e-25 3x_Contig17 111 3e-24 >3x_Contig1390 Length = 7609 Score = 1665 bits (840), Expect = 0.0 Identities = 880/888 (99%), Gaps = 4/888 (0%) Strand = Plus / Plus Query: 49 cgataaacgaagtttaactactgcaagcatgcgagaggccctgggttcaattcccagctc 108 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5499 cgataaacgaagtttaactactgcaagcatgcgagaggccctgggttcaattcccagctc 5558 Query: 109 gccccaattaatttttcccaatttatttcccggtatatccgggtaatcgtactacattca 168 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5559 gccccaattaatttttcccaatttatttcccggtatatccgggtaatcgtactacattca 5618 Query: 169 taattcaaccttctttttccactttaattcatatttacgatgaataagaatattaattga 228 |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct: 5619 taattcaaccttctttttccactttaattcatatttacgatgaataagaagaagaattga 5678 Query: 229 gcctgaacatcaatatcaaacccaaatgcgcagaccgatcagatctgaagcccaagctca 288 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5679 gcctgaacatcaatatcaaacccaaatgcgcagaccgatcagatctgaagcccaagctca 5738 Query: 289 tcgcgagtgccataaacaacagaaaataccaattctcaaaatttatcacactaatgtcac 348 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5739 tcgcgagtgccataaacaacagaaaataccaattctcaaaatttatcacactaatgtcac 5798 Query: 349 aacaagcgagtaccgaactcacgatcgaagagggagagctaccgacaaggtttgagattg 408 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5799 aacaagcgagtaccgaactcacgatcgaagagggagagctaccgacaaggtttgagattg 5858 Query: 409 aattagaatttgttcaatctttggcaaacataccatacgtcacatatctactgacacaat 468 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5859 aattagaatttgttcaatctttggcaaacataccatacgtcacatatctactgacacaat 5918 Query: 469 tgcagctttggcaagacccaaagtttaaaagatacttgaaataccttgagtactggcatg 528 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5919 tgcagctttggcaagacccaaagtttaaaagatacttgaaataccttgagtactggcatg 5978 Query: 529 agccggaatatgcccaatgcattgtgtatccaaattctctattcgttttgaaacttttga 588 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5979 agccggaatatgcccaatgcattgtgtatccaaattctctattcgttttgaaacttttga 6038 Query: 589 ataccctatttgaaggatctacagtgaacgagaacggtgtgcttgaaggatgtgaacacg 648 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6039 ataccctatttgaaggatctacagtgaacgagaacggtgtgcttgaaggatgtgaacacg 6098 Query: 649 tacctcgtattcttcaaactcagggtacccaatggatgaatgagatggtggagaggtgga 708 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6099 tacctcgtattcttcaaactcagggtacccaatggatgaatgagatggtggagaggtgga 6158 Query: 709 gagagtaatatgactggatcgcatttacccttaagtttccacctgtacaatgcgattgtc 768 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6159 gagagtaatatgactggatcgcatttacccttaagtttccacctgtacaatgcgattgtc 6218 Query: 769 tcaatatctatggaaaactgtatcacattggaataatctctgatcggctcacaaatagga 828 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6219 tcaatatctatggaaaactgtatcacattggaataatctctgatcggctcacaaatagga 6278 Query: 829 aagttcagacctgtatcaagaaaccctgac-actattggtattgggtgttttcaagtttg 887 |||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||| Sbjct: 6279 aagttcagacctgtatcaag-aaccctgacaactattggtatt-ggtgttttcaagtttg 6336 Query: 888 tccgattttcaacacaactcaatcaaatgatgtaatttcaattcaggg 935 | ||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 6337 t-cgattttcaacacaactcaatcagatgatgtaatttcaattcaggg 6383 >3x_Contig1623 Length = 14379 Score = 123 bits (62), Expect = 7e-28 Identities = 69/70 (98%), Gaps = 1/70 (1%) Strand = Plus / Minus Query: 49 cgataaacgaagtttaactactgcaa-gcatgcgagaggccctgggttcaattcccagct 107 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 7072 cgataaacgaagtttaactactgcaaagcatgcgagaggccctgggttcaattcccagct 7013 Query: 108 cgccccaatt 117 |||||||||| Sbjct: 7012 cgccccaatt 7003 >3x_Contig1718 Length = 19496 Score = 117 bits (59), Expect = 4e-26 Identities = 66/67 (98%), Gaps = 1/67 (1%) Strand = Plus / Plus Query: 49 cgataaacgaagtttaactactgcaa-gcatgcgagaggccctgggttcaattcccagct 107 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 4962 cgataaacgaagtttaactactgcaaagcatgcgagaggccctgggttcaattcccagct 5021 Query: 108 cgcccca 114 ||||||| Sbjct: 5022 cgcccca 5028 >3x_Contig1762 Length = 22098 Score = 115 bits (58), Expect = 2e-25 Identities = 68/70 (97%), Gaps = 1/70 (1%) Strand = Plus / Plus Query: 49 cgataaacgaagtttaactactgcaa-gcatgcgagaggccctgggttcaattcccagct 107 ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 6166 cgataaacggagtttaactactgcaaagcatgcgagaggccctgggttcaattcccagct 6225 Query: 108 cgccccaatt 117 |||||||||| Sbjct: 6226 cgccccaatt 6235 >3x_Contig1487 Length = 9002 Score = 115 bits (58), Expect = 2e-25 Identities = 65/66 (98%), Gaps = 1/66 (1%) Strand = Plus / Minus Query: 49 cgataaacgaagtttaactactgcaa-gcatgcgagaggccctgggttcaattcccagct 107 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 5396 cgataaacgaagtttaactactgcaaagcatgcgagaggccctgggttcaattcccagct 5337 Query: 108 cgcccc 113 |||||| Sbjct: 5336 cgcccc 5331 >3x_Contig17 Length = 819 Score = 111 bits (56), Expect = 3e-24 Identities = 66/68 (97%), Gaps = 1/68 (1%) Strand = Plus / Minus Query: 49 cgataaacgaagtttaactactgcaa-gcatgcgagaggccctgggttcaattcccagct 107 |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 202 cgataaacgaggtttaactactgcaaagcatgcgagaggccctgggttcaattcccagct 143 Query: 108 cgccccaa 115 |||||||| Sbjct: 142 cgccccaa 135 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7040 Number of Sequences: 1807 Number of extensions: 7040 Number of successful extensions: 64 Number of sequences better than 1.0e-20: 6 length of query: 935 length of database: 10,358,551 effective HSP length: 16 effective length of query: 919 effective length of database: 10,329,639 effective search space: 9492938241 effective search space used: 9492938241 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)