BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZE03FM1.SCF screened BAC_end
(942 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1806 1451 0.0
>3x_Contig1806
Length = 53694
Score = 1451 bits (732), Expect = 0.0
Identities = 752/756 (99%), Gaps = 2/756 (0%)
Strand = Plus / Minus
Query: 85 attgcagctcctatgataattttgtagtttttctatgttcaacctgaagtataaagaatg 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38826 attgcagctcctatgataattttgtagtttttctatgttcaacctgaagtataaagaatg 38767
Query: 145 cacaagcatttttcctaacatgcttctcacagcttccaaaatgtgtgatagaatatgcat 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38766 cacaagcatttttcctaacatgcttctcacagcttccaaaatgtgtgatagaatatgcat 38707
Query: 205 agaagtattggattgaaaaagctgcaagataaattcaggtgggg-aaaaaatagaaaaca 263
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 38706 agaagtattggattgaaaaagctgcaagataaattcaggtgggggaaaaaatagaaaaca 38647
Query: 264 gtttcatgaaatggcaaatattaagattcataagaactcattaacctaaggttaaatgcg 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38646 gtttcatgaaatggcaaatattaagattcataagaactcattaacctaaggttaaatgcg 38587
Query: 324 ggcttttgtcaatcctttctttgaagacttcgtttttttgacaatatgcgaatcttgtgg 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38586 ggcttttgtcaatcctttctttgaagacttcgtttttttgacaatatgcgaatcttgtgg 38527
Query: 384 tcagccttacgagtttgttggctattgtattcatagtaccaaaaaacaaattgtgacatt 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38526 tcagccttacgagtttgttggctattgtattcatagtaccaaaaaacaaattgtgacatt 38467
Query: 444 caggtgtttaaagttgtttttttaacggattttctgcgttttccaaaaatcctcataaat 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38466 caggtgtttaaagttgtttttttaacggattttctgcgttttccaaaaatcctcataaat 38407
Query: 504 taaagttacatctctccccttacatcgatttatagaagaaagacataggagtattttgca 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38406 taaagttacatctctccccttacatcgatttatagaagaaagacataggagtattttgca 38347
Query: 564 atttgatacttaatacaagggagggccagcttatagaactataggaaatgattataagat 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38346 atttgatacttaatacaagggagggccagcttatagaactataggaaatgattataagat 38287
Query: 624 atagaaaacaatgtttttacttttgcaagataagcagaaggtgaaagctgagaatagcat 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38286 atagaaaacaatgtttttacttttgcaagataagcagaaggtgaaagctgagaatagcat 38227
Query: 684 aaaattgtttattcagtgaaaaagtgtgtcagaaagatcatgttgataggtataaaaaaa 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38226 aaaattgtttattcagtgaaaaagtgtgtcagaaagatcatgttgataggtataaaaaaa 38167
Query: 744 acgttaaaatagatcgcattcacagcacctatttgtagtcacgatgctatctagaagacg 803
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38166 acgtaaaaatagatcgcattcacagcacctatttgtagtcacgatgctatctagaagacg 38107
Query: 804 aaagaacataacagtttgttttttgtcggttttttt 839
|||||||||||||| |||||||||| ||||||||||
Sbjct: 38106 aaagaacataacag-ttgttttttgccggttttttt 38072
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7707
Number of Sequences: 1807
Number of extensions: 7707
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)