BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC13ZE03RM1.SCF screened BAC_end
         (947 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1521                                                        1653   0.0  

>3x_Contig1521 
          Length = 8057

 Score = 1653 bits (834), Expect = 0.0
 Identities = 889/902 (98%), Gaps = 4/902 (0%)
 Strand = Plus / Minus

                                                                        
Query: 45   ctttttcctcagaatagatactcttattttcatagacttccataggcactatacctttaa 104
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1318 ctttttcctcagaatagatactctcattttcatagacttccataggcactatacctttaa 1259

                                                                        
Query: 105  aggcaccattacagagatctacaacctgctctaggtataccttgagctgttcttcccagg 164
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1258 aggcaccattacagagatctacaacctgctctaggtataccttgagctgttcttcccagg 1199

                                                                        
Query: 165  tcactggctttacggcgtccatggttttgatgctttctatgctcacatcagttggtatca 224
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1198 tcactggctttacggcgtccatggttttgatgctttctatgctcacatcagctggtatca 1139

                                                                        
Query: 225  aatcgttataaatgaaatcgttgtccttaattaaacttttcaacttctcttctattactg 284
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1138 aatcgttataaatgaaatcgttgtccttaattaaacttttcaacttctcttctattactg 1079

                                                                        
Query: 285  cttttaaccctgttagatcaatctcatccttcacatataccttatagaaaccagcctctt 344
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1078 cttttaaccctgttagatcaatctcatccttcacatataccttatagaaaccagcctctt 1019

                                                                        
Query: 345  ttatttcatgtaccgcaagcttaccataagctatcgcctctccaattttcttagcttcct 404
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1018 ttatttcatgtaccgcaagcttaccataagctatcgcctctccaattttcttagcttcct 959

                                                                        
Query: 405  ctagcactctcaagtgattgtatgtcgaaatagccctatacaagtgaacctttagggtaa 464
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 958  ctagcactctcaagtgattgtatgtcgaaatagccctatacaagtgaacctttagggtaa 899

                                                                        
Query: 465  ttatatccttccatttgtcttctccataaggcgtagtcccaaaagttgctgttgaactat 524
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898  ttatatccttccatttgtcttctccataaggcgtagtcccaaaagttgctgttgaactat 839

                                                                        
Query: 525  cctcataaaattcttgacatttctcatacaaatttaaggcagtatgtgctagtttgctga 584
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838  cctcataaaattcttgacatttctcatacaaatttaaggcagtatgtgctagtttgctga 779

                                                                        
Query: 585  tcaaagatgctcttttcgaagcatctggtccattaatcaacgtcatgagaaacatttcct 644
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778  tcaaagatgctcttttcgaagcatctggtccattaatcaacgtcatgagaaacatttcct 719

                                                                        
Query: 645  gagcttcggcgtgcaacaatgtggagagaaaagatgtattttctgctgcacaatcgatag 704
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718  gagcttcggcgtgcaacaatgtggagagaaaagatgtattttctgctgcacaatcgatag 659

                                                                        
Query: 705  aaggtgaattcaaaaagttgttcgacatataatcgaagcaagccattgccttgctcaaat 764
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658  aaggtgaattcaaaaagttgttcgacatataatcgaagcaagccattgccttgctcaaat 599

                                                                        
Query: 765  aaggaatcgcgctcttataattatcagacatttttttcttagcgatttgagacattagga 824
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 598  aaggaatcgcgctcttataattatcagacatttttttcttagcgatttgagacaatagaa 539

                                                                        
Query: 825  cacccgatgttgtacattgacagatgatttctcaaagactacagtatgttgccttgaaat 884
            || ||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 538  ca-ccgatgttgtaca-tgacagatgatttctcaaagactacagtatgttg-cttgaatt 482

                                                                        
Query: 885  ttttttctgacaacctaaatggatattctgcttcataccacgtgaaaatccatctgttat 944
            ||||||||||||||||| |  ||||||||||||||||||||||| |||||||||||| ||
Sbjct: 481  ttttttctgacaacctagagtgatattctgcttcataccacgtg-aaatccatctgtaat 423

              
Query: 945  ga 946
            ||
Sbjct: 422  ga 421


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7079
Number of Sequences: 1807
Number of extensions: 7079
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)