BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZE05FM1.SCF screened BAC_end
(938 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1554 1651 0.0
>3x_Contig1554
Length = 8957
Score = 1651 bits (833), Expect = 0.0
Identities = 847/852 (99%)
Strand = Plus / Plus
Query: 87 cgatatattttttagagttattcaggctaatagatgtgtgcggttgagcttttttgtaag 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6328 cgatatattttttagagttattcaggctaatagatgtgtgcggttgagcttttttgtaag 6387
Query: 147 ggttggcaaagctaactatcgttatagcttggtacccggtaacttttagaatgtcctatc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6388 ggttggcaaagctaactatcgttatagcttggtacccggtaacttttagaatgtcctatc 6447
Query: 207 cggtaactttcggttcttagaaagaattttgaccatacagggaccttcttccatacagca 266
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6448 cggtaactttcggctcttagaaagaattttgaccatacagggaccttcttccatacagca 6507
Query: 267 aagaatgttctacttatttctatcgctagatgaaaattccagtcattcaatatgaaagta 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6508 aagaatgttctacttatttctatcgctagatgaaaattccagtcattcaatatgaaagta 6567
Query: 327 agaatgttcagtgcaggtttcaagttactaggactgccagcttctcctatttttcgccct 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6568 agaatgttcagtgcaggtttcaagttactaggactgccagcttctcctatttttcgccct 6627
Query: 387 ttcacgtcattcccagttcgctcttggaaattaaaagaaagtactgaaacataatgtcta 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6628 ttcacgtcattcccagttcgctcttggaaattaaaagaaagtactgaaacataatgtcta 6687
Query: 447 ttccccttcacaatcacttcctctgtatataatcgcatcttatcccttgaatattatgta 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6688 ttccccttcacaatcacttcctctgtatataatcgcatcttatcccttgaatattatgta 6747
Query: 507 taaacgctacggtattcacgctgccaatacctttcactacgtttagtttgttcctggtaa 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6748 taaacgctacggtattcacgctgccaatacctttcactacgtttagtttgttcctggtaa 6807
Query: 567 aaccattggcatccagtctaacaatttgtgcacgtgaccttggaatttggttttttttcc 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6808 aaccattggcatccagtctaacaatttgtgcacgtgaccttggaatttggttttttttcc 6867
Query: 627 cttcgatggcctgggaacctgccgcctaattggcagaataacgcgtcgacctactttact 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6868 cttcgatggcctgggaacctgccgcctaattggcagaataacgcgtcgacctactttact 6927
Query: 687 ttccaacgaaagaatcgatttgatagaaatcatgaaaggaacaaaaagtttttacaacga 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6928 ttccaacgaaagaatcgatttgatagaaatcatgaaaggaacaaaaagtttttacaacga 6987
Query: 747 ggaccaggtttgtttaaataaacgactttctgncatttaaagatcaagcagtgagtctaa 806
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 6988 ggaccaggtttgtttaaataaacgactttctgcaatttaaagatcaagcagtgagtctaa 7047
Query: 807 ttcaccagacctgtaacttctcctattcgatagtcagtgctcgatacagcagaacttaaa 866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7048 ttcaccagacctgtaacttctcctattcgatagtcagtgctcgatacagcagaacttaaa 7107
Query: 867 gactggttgtctttgtttttagtccatttagactagtaataccagctgaagaaaggattt 926
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 7108 gactggttgtctttgttttaagtccatttagactagtaataccagctgaagaaaggattt 7167
Query: 927 gatcatttcagt 938
||||||| ||||
Sbjct: 7168 gatcattccagt 7179
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6362
Number of Sequences: 1807
Number of extensions: 6362
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)